Variant report

Variant	esv3519230
Chromosome Location	chr13:85874594-85884052
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541936267	chr13:85883652-85883653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs557204363	chr13:85883657-85883658	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs1412029	chr13:85883666-85883667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs530528778	chr13:85883671-85883672	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs186414041	chr13:85883680-85883681	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs191177900	chr13:85883698-85883699	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs182958021	chr13:85883738-85883739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs564440060	chr13:85883759-85883760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs187593888	chr13:85883770-85883771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs550204872	chr13:85883792-85883793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs1175964	chr13:85883801-85883802	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs529827206	chr13:85883820-85883821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs547962600	chr13:85883851-85883852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566528711	chr13:85883852-85883853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs4911062	chr13:85883880-85883881	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs558738684	chr13:85883938-85883939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570800230	chr13:85883981-85883982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs4911063	chr13:85884000-85884001	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs556621953	chr13:85884011-85884012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs35128400	chr13:85884032-85884033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85883600-85883800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:85883800-85887600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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