Variant report

Variant	esv3521831
Chromosome Location	chr11:103915292-103919440
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:148 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570549175	chr11:103915292-103915293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34974666	chr11:103915326-103915327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541407366	chr11:103915387-103915388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs138948065	chr11:103915388-103915389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs35570444	chr11:103915389-103915390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376531861	chr11:103915395-103915396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs533245017	chr11:103915493-103915494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190194393	chr11:103915514-103915515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570182532	chr11:103915538-103915539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529368993	chr11:103915548-103915549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112868243	chr11:103915559-103915560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565908386	chr11:103915574-103915575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs534816029	chr11:103915590-103915591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs180779570	chr11:103915635-103915636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571480572	chr11:103915652-103915653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536648996	chr11:103915654-103915655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs369992350	chr11:103915685-103915686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs260811	chr11:103915739-103915740	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs139475926	chr11:103915755-103915756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574441782	chr11:103915766-103915767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542348915	chr11:103915790-103915791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552745800	chr11:103915822-103915823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552630410	chr11:103915858-103915859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs572591360	chr11:103915870-103915871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs566630378	chr11:103915914-103915915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35134401	chr11:103915922-103915923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs260812	chr11:103916020-103916021	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs564627343	chr11:103916126-103916127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs185224771	chr11:103916152-103916153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543850947	chr11:103916154-103916155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200299115	chr11:103916208-103916209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563705021	chr11:103916229-103916230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536002503	chr11:103916243-103916244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529281330	chr11:103916247-103916248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs549543734	chr11:103916250-103916251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs566158207	chr11:103916257-103916258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10400384	chr11:103916353-103916354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551509603	chr11:103916381-103916382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs571472916	chr11:103916382-103916383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs191954259	chr11:103916386-103916387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs183865704	chr11:103916399-103916400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs369698819	chr11:103916412-103916413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373848198	chr11:103916449-103916450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149233665	chr11:103916454-103916455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs260813	chr11:103916464-103916465	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs368917742	chr11:103916502-103916503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188802748	chr11:103916508-103916509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs74940646	chr11:103916510-103916511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191683720	chr11:103916511-103916512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs578097374	chr11:103916512-103916513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Melanoma	17363583	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Tetralogy of Fallot	22912587	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103902200-103922800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:103908600-103920400	Weak transcription	Ovary	ovary
3	chr11:103915000-103925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:103917200-103917400	Enhancers	Fetal Brain Female	brain
5	chr11:103917400-103931000	Weak transcription	Fetal Brain Female	brain

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