Variant report

Variant	esv3522168
Chromosome Location	chr17:17230375-17231258
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17208563..17211113-chr17:17230202..17232936,2	K562	blood:
2	chr17:17205995..17209793-chr17:17228137..17230862,4	MCF-7	breast:
3	chr17:17228475..17230243-chr17:17230448..17232701,2	K562	blood:

Variant related genes	Relation type
ENSG00000205309	chromatin interactions

Extended variants
information (count: 25 )
Associated
traits (count: 160 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377161455	chr17:17230381-17230382	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs200593641	chr17:17230382-17230383	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs201943829	chr17:17230383-17230384	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs111408448	chr17:17230393-17230394	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs377021109	chr17:17230463-17230464	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs546667959	chr17:17230492-17230493	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs7210625	chr17:17230516-17230517	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs187329336	chr17:17230594-17230595	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs549043502	chr17:17230645-17230646	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs561744146	chr17:17230659-17230660	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs568833182	chr17:17230721-17230722	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs537699731	chr17:17230736-17230737	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs556945796	chr17:17230843-17230844	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs191329346	chr17:17230947-17230948	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113140806	chr17:17231021-17231022	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539592774	chr17:17231028-17231029	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553407023	chr17:17231051-17231052	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs573389960	chr17:17231055-17231056	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542422940	chr17:17231073-17231074	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183911741	chr17:17231080-17231081	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs189511443	chr17:17231112-17231113	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs576013960	chr17:17231120-17231121	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs544881439	chr17:17231165-17231166	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564113497	chr17:17231226-17231227	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs4985707	chr17:17231250-17231251	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:160)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Colorectal cancer	16774939	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Breast cancer	17603634	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
ovarian endometriomas	16273235	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Gastric cancer	18160780	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Neuropathy	17597781	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	17015230	CNVD
Smith-Magenis syndrome	17597781	CNVD
Potocki-lupski syndrome	18059269	CNVD
Potocki-lupski syndrome	17597781	CNVD
Mental retardation	17847001	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	20409316	CNVD
Breast cancer	21509527	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22543975	CNVD

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17207400-17235400	Weak transcription	Lung	lung
2	chr17:17207600-17246400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr17:17207800-17243400	Weak transcription	Colon Smooth Muscle	Colon
4	chr17:17208600-17255400	Weak transcription	Brain Substantia Nigra	brain
5	chr17:17208800-17236000	Weak transcription	Right Ventricle	heart
6	chr17:17210600-17233400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:17213000-17248000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:17215600-17231400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:17215600-17252800	Weak transcription	Fetal Lung	lung
10	chr17:17216600-17240800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:17217000-17231800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr17:17217200-17253800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr17:17218600-17239800	Weak transcription	Fetal Thymus	thymus
14	chr17:17219000-17231400	Weak transcription	K562	blood
15	chr17:17219000-17255400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr17:17224600-17248200	Weak transcription	Pancreas	Pancrea
17	chr17:17226000-17235600	Weak transcription	Spleen	Spleen
18	chr17:17226200-17232000	Strong transcription	Primary hematopoietic stem cells	blood
19	chr17:17226600-17251200	Weak transcription	Primary T cells from cord blood	blood
20	chr17:17226800-17246800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr17:17227200-17254000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:17227600-17230400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr17:17228200-17258200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:17228600-17255000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr17:17228800-17245600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr17:17229000-17245800	Weak transcription	Dnd41	blood
27	chr17:17229200-17247400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr17:17229200-17255200	Weak transcription	Brain Hippocampus Middle	brain
29	chr17:17229400-17247800	Weak transcription	Fetal Intestine Small	intestine
30	chr17:17229600-17245600	Weak transcription	Brain Angular Gyrus	brain
31	chr17:17229600-17246000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:17229800-17231400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr17:17229800-17231400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:17229800-17258400	Weak transcription	Thymus	Thymus
35	chr17:17230000-17231200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:17230000-17231200	Weak transcription	Fetal Brain Female	brain
37	chr17:17230000-17245800	Weak transcription	Brain Germinal Matrix	brain
38	chr17:17230000-17246400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr17:17230000-17250000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr17:17230200-17231400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr17:17230200-17231600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr17:17230200-17232400	Weak transcription	Gastric	stomach
43	chr17:17230200-17235400	Weak transcription	Fetal Stomach	stomach
44	chr17:17230200-17236600	Weak transcription	Ovary	ovary
45	chr17:17230200-17245400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr17:17230200-17245400	Weak transcription	Fetal Muscle Leg	muscle
47	chr17:17230200-17246000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr17:17230200-17250600	Weak transcription	Adipose Nuclei	Adipose
49	chr17:17230200-17252200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr17:17230200-17258200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links