Variant report

Variant	esv3523222
Chromosome Location	chr10:1502529-1503147
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111658189	chr10:1502533-1502534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs202002776	chr10:1502541-1502542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111773542	chr10:1502544-1502545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113441316	chr10:1502547-1502548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs71500113	chr10:1502550-1502551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs566743494	chr10:1502557-1502558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111399084	chr10:1502567-1502568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71500114	chr10:1502582-1502583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs200438948	chr10:1502584-1502585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12761100	chr10:1502603-1502604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12784688	chr10:1502612-1502613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112564227	chr10:1502615-1502616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12761106	chr10:1502616-1502617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113101934	chr10:1502618-1502619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538799234	chr10:1502637-1502638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12784706	chr10:1502646-1502647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs112924546	chr10:1502649-1502650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558831203	chr10:1502651-1502652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs112524974	chr10:1502652-1502653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12784719	chr10:1502680-1502681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12766352	chr10:1502683-1502684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs71491386	chr10:1502686-1502687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs538512584	chr10:1502688-1502689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12784863	chr10:1502714-1502715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs12783454	chr10:1502720-1502721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs12784875	chr10:1502748-1502749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574343392	chr10:1502749-1502750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141602997	chr10:1502751-1502752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12783465	chr10:1502754-1502755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539977711	chr10:1502762-1502763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577276245	chr10:1502766-1502767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112600571	chr10:1502771-1502772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546232367	chr10:1502773-1502774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12784896	chr10:1502782-1502783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12766592	chr10:1502785-1502786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs374283994	chr10:1502787-1502788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71491387	chr10:1502788-1502789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577121509	chr10:1502794-1502795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546062541	chr10:1502803-1502804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111916849	chr10:1502805-1502806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs113165199	chr10:1502816-1502817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113097119	chr10:1502820-1502821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs111696297	chr10:1502839-1502840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562669360	chr10:1502855-1502856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111919428	chr10:1502856-1502857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531665683	chr10:1502862-1502863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs113451714	chr10:1502873-1502874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113313242	chr10:1502909-1502910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111412135	chr10:1502922-1502923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112371474	chr10:1502941-1502942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1493800-1504400	Weak transcription	Esophagus	oesophagus
2	chr10:1500400-1503000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:1500400-1503200	Weak transcription	Dnd41	blood
4	chr10:1501000-1503200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:1502000-1506200	Weak transcription	Gastric	stomach
6	chr10:1502200-1504600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:1502200-1509000	Weak transcription	Spleen	Spleen
8	chr10:1503000-1506400	Enhancers	Primary B cells from peripheral blood	blood

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