Variant report

Variant	esv3523797
Chromosome Location	chr8:11244392-11248290
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:11247820-11247970	GM12865	blood:	n/a	n/a
2	CTCF	chr8:11247880-11248030	GM12872	blood:	n/a	n/a
3	CTCF	chr8:11247889-11247918	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr8:11247860-11248010	GM12873	blood:	n/a	n/a
5	CTCF	chr8:11247780-11247930	HepG2	liver:	n/a	n/a
6	CTCF	chr8:11245280-11245430	GM06990	blood:	n/a	n/a
7	GATA3	chr8:11244654-11245125	MCF-7	breast:	n/a	n/a
8	MAFF	chr8:11246513-11246670	HepG2	liver:	n/a	chr8:11246597-11246611 chr8:11246598-11246616
9	MAFK	chr8:11246439-11246723	HepG2	liver:	n/a	chr8:11246597-11246611 chr8:11246594-11246614 chr8:11246596-11246612 chr8:11246599-11246614
10	MAFK	chr8:11246526-11246726	HepG2	liver:	n/a	chr8:11246597-11246611 chr8:11246594-11246614 chr8:11246596-11246612 chr8:11246599-11246614
11	MYC	chr8:11245996-11246142	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr8:11247328-11247426	Gliobla	brain:	n/a	n/a
13	POLR2A	chr8:11247773-11247777	Gliobla	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11242265..11244818-chr8:11252582..11254482,2	MCF-7	breast:
2	chr8:11220966..11222998-chr8:11244334..11246099,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf12-1	chr8:11247933-11248244	NONHSAT125054

Variant related genes	Relation type
C8orf12	TF binding region

Extended variants
information (count: 182 )
Associated
traits (count: 138 )

Variant overlapped rSNPs/rCNVs (count:182 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537282887	chr8:11244619-11244620	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs552071192	chr8:11244636-11244637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs368767116	chr8:11244668-11244669	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs181399530	chr8:11244686-11244687	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs534636254	chr8:11244706-11244707	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs111290307	chr8:11244716-11244717	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs143886095	chr8:11244717-11244718	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs535451857	chr8:11244773-11244774	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs60625333	chr8:11244793-11244794	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs549607177	chr8:11244815-11244816	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs564089832	chr8:11244819-11244820	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs115284871	chr8:11244832-11244833	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs6980481	chr8:11244841-11244842	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs28432983	chr8:11244857-11244858	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs551885687	chr8:11244870-11244871	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs148634645	chr8:11244871-11244872	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs75910389	chr8:11244874-11244875	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs34867058	chr8:11244887-11244888	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs562321201	chr8:11244909-11244910	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs529762511	chr8:11244935-11244936	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs548201021	chr8:11244951-11244952	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs185485348	chr8:11244953-11244954	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs530600083	chr8:11244960-11244961	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs552223570	chr8:11244984-11244985	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs190093809	chr8:11244989-11244990	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs534777395	chr8:11244990-11244991	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs142135935	chr8:11245017-11245018	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs527731083	chr8:11245025-11245026	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs535489984	chr8:11245036-11245037	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs181063383	chr8:11245053-11245054	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs1560971	chr8:11245064-11245065	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs185902800	chr8:11245091-11245092	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs192422954	chr8:11245097-11245098	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs573359249	chr8:11245217-11245218	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs540818907	chr8:11245232-11245233	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs79177516	chr8:11245261-11245262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs183978544	chr8:11245268-11245269	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs574372516	chr8:11245271-11245272	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs554000135	chr8:11245276-11245277	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs374031260	chr8:11245279-11245280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs12682349	chr8:11245303-11245304	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs563296797	chr8:11245325-11245326	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs549026086	chr8:11245342-11245343	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs545592000	chr8:11245350-11245351	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs564163116	chr8:11245382-11245383	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs528313590	chr8:11245423-11245424	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs187745005	chr8:11245453-11245454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs568041104	chr8:11245485-11245486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs151195312	chr8:11245489-11245490	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs536415570	chr8:11245493-11245494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:138)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11244600-11244800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:11244600-11248000	Enhancers	Pancreas	Pancrea
3	chr8:11244800-11245000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:11244800-11245200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:11244800-11245600	Enhancers	NHEK	skin
6	chr8:11245000-11245200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:11245200-11247800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:11245600-11247200	Weak transcription	NHEK	skin
9	chr8:11246200-11246600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr8:11246400-11246600	Enhancers	Gastric	stomach
11	chr8:11246600-11250200	Weak transcription	Gastric	stomach
12	chr8:11247200-11247400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:11247200-11248200	Bivalent Enhancer	NHEK	skin
14	chr8:11247400-11248200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:11247600-11247800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:11247800-11248000	Enhancers	Spleen	Spleen
17	chr8:11247800-11248400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:11247800-11248600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:11247800-11248600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:11248000-11250200	Weak transcription	Pancreas	Pancrea
21	chr8:11248200-11248400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:11248200-11248600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:11248200-11248600	Flanking Bivalent TSS/Enh	NHEK	skin
24	chr8:11248200-11249000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:11248200-11249000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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