Variant report

Variant	esv3525276
Chromosome Location	chr14:81877099-81881797
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:122)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:81878850-81879176	A549	lung:	n/a	n/a
2	CEBPB	chr14:81878865-81879164	ECC-1	luminal epithelium:	n/a	n/a
3	CEBPB	chr14:81878944-81879032	IMR90	lung:	n/a	n/a
4	CEBPB	chr14:81878924-81879121	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr14:81878895-81879151	K562	blood:	n/a	n/a
6	CTCF	chr14:81879369-81879450	ProgFib	skin:	n/a	n/a
7	CTCF	chr14:81879565-81879655	Lung_OC	lung:	n/a	n/a
8	ESR1	chr14:81879118-81879383	ECC-1	luminal epithelium:	n/a	n/a
9	MAZ	chr14:81881715-81881775	HepG2	liver:	n/a	n/a
10	POLR2A	chr14:81878168-81878329	K562	blood:	n/a	n/a
11	YY1	chr14:81879145-81879402	ECC-1	luminal epithelium:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:81879375-81879425	HCT-116	colon:	n/a
2	chr14:81879247-81879297	SAEC	small airway:	n/a
3	chr14:81879375-81879425	GM06990	blood:	n/a
4	chr14:81879247-81879297	RPTEC	kidney:	n/a
5	chr14:81879247-81879297	HCT-116	colon:	n/a
6	chr14:81879247-81879297	HRCEpiC	kidney:	n/a
7	chr14:81879375-81879425	HAEpiC	amniotic membrane:	n/a
8	chr14:81879247-81879297	HAEpiC	amniotic membrane:	n/a
9	chr14:81879247-81879297	ProgFib	skin:	n/a
10	chr14:81879375-81879425	ECC-1	luminal epithelium:	n/a
11	chr14:81879375-81879425	Hela-S3	cervix:	n/a
12	chr14:81879375-81879425	PFSK-1	brain:	n/a
13	chr14:81879375-81879425	AoSMC	blood vessel:	n/a
14	chr14:81879247-81879297	LNCaP	prostate:	n/a
15	chr14:81879247-81879297	Hepatocyte	liver:	n/a
16	chr14:81879375-81879425	SK-N-MC	brain:	n/a
17	chr14:81879375-81879425	HEEpiC	esophagus:	n/a
18	chr14:81879247-81879297	PFSK-1	brain:	n/a
19	chr14:81879375-81879425	HCPEpiC	choroid plexus:	n/a
20	chr14:81879247-81879297	NB4	blood:	n/a
21	chr14:81879247-81879297	NH-A	brain:	n/a
22	chr14:81879375-81879425	HL-60	blood:	n/a
23	chr14:81879247-81879297	MCF10A-Er-Src	breast:	n/a
24	chr14:81879247-81879297	T-47D	breast:	n/a
25	chr14:81879375-81879425	HEK293	kidney:	embryo
26	chr14:81879375-81879425	Hepatocyte	liver:	n/a
27	chr14:81879375-81879425	MCF-7	breast:	n/a
28	chr14:81879375-81879425	HUVEC	blood vessel:	n/a
29	chr14:81879247-81879297	HUVEC	blood vessel:	n/a
30	chr14:81879247-81879297	AG09309	skin:	n/a
31	chr14:81879375-81879425	H1-hESC	embryonic stem cell:	embryo
32	chr14:81879375-81879425	AG09319	gingival:	n/a
33	chr14:81879375-81879425	SK-N-SH_RA	brain:	n/a
34	chr14:81879247-81879297	AoSMC	blood vessel:	n/a
35	chr14:81879247-81879297	IMR90	lung:	fetal
36	chr14:81879247-81879297	GM12878	blood:	n/a
37	chr14:81879247-81879297	GM06990	blood:	n/a
38	chr14:81879247-81879297	HMEC	breast:	n/a
39	chr14:81879375-81879425	SK-N-SH	brain:	n/a
40	chr14:81879375-81879425	NB4	blood:	n/a
41	chr14:81879247-81879297	U87	brain:	n/a
42	chr14:81879247-81879297	NT2-D1	testis:	n/a
43	chr14:81879375-81879425	RPTEC	kidney:	n/a
44	chr14:81879247-81879297	HRPEpiC	eye:	n/a
45	chr14:81879375-81879425	BE2_C	brain:	n/a
46	chr14:81879247-81879297	HCF	heart:	n/a
47	chr14:81879375-81879425	GM12878	blood:	n/a
48	chr14:81879247-81879297	SK-N-MC	brain:	n/a
49	chr14:81879247-81879297	H1-hESC	embryonic stem cell:	embryo
50	chr14:81879375-81879425	HMEC	breast:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81685671..81687321-chr14:81879290..81881702,3	MCF-7	breast:
2	chr14:81862798..81865439-chr14:81880673..81882798,2	K562	blood:
3	chr14:81867994..81870092-chr14:81876125..81877918,2	K562	blood:
4	chr14:81685691..81688551-chr14:81879364..81882605,3	K562	blood:
5	chr14:81875040..81877398-chr14:81879695..81881536,2	K562	blood:
6	chr14:81875040..81877398-chr14:81879695..81881536,2	K562	blood:
7	chr14:81684469..81687360-chr14:81875537..81877645,3	K562	blood:
8	chr14:81684550..81687395-chr14:81881105..81883883,2	K562	blood:
9	chr14:81876407..81878625-chr14:81895373..81897999,2	K562	blood:
10	chr14:81876702..81879078-chr14:81892366..81894170,2	K562	blood:
11	chr14:81881608..81884227-chr14:81901358..81903544,2	K562	blood:
12	chr14:81871493..81873378-chr14:81876007..81877708,2	K562	blood:
13	chr14:81880605..81883337-chr14:81885961..81888667,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEL1L-11	chr14:81881291-81881385	NONHSAT038064

No data

Variant related genes	Relation type
ENSG00000258605	TF binding region
ENSG00000258605	CpG island
ENSG00000140022	chromatin interactions
ENSG00000165417	chromatin interactions

Extended variants
information (count: 192 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:192 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138426340	chr14:81877099-81877100	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs17111790	chr14:81877107-81877108	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs377493575	chr14:81877123-81877124	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs369886497	chr14:81877127-81877128	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs545702119	chr14:81877155-81877156	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs563704669	chr14:81877157-81877158	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs187537322	chr14:81877178-81877179	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs575409056	chr14:81877236-81877237	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs35663993	chr14:81877263-81877264	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs550138010	chr14:81877277-81877278	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs542844093	chr14:81877317-81877318	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs540616000	chr14:81877330-81877331	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs552969302	chr14:81877351-81877352	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs531445258	chr14:81877355-81877356	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs561946643	chr14:81877370-81877371	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs542082318	chr14:81877371-81877372	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs8022070	chr14:81877382-81877383	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs377323156	chr14:81877439-81877440	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs530685912	chr14:81877473-81877474	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs546064735	chr14:81877493-81877494	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs564559995	chr14:81877509-81877510	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs528998653	chr14:81877513-81877514	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs547704297	chr14:81877546-81877547	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs191227880	chr14:81877554-81877555	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs546654754	chr14:81877581-81877582	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs568412981	chr14:81877583-81877584	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs529286368	chr14:81877588-81877589	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs370327731	chr14:81877605-81877606	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs372764521	chr14:81877652-81877653	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs182961508	chr14:81877658-81877659	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs10594130	chr14:81877679-81877680	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs375425474	chr14:81877680-81877681	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs569454016	chr14:81877692-81877693	Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs539642865	chr14:81877802-81877803	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs557970643	chr14:81877808-81877809	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs570198226	chr14:81877815-81877816	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs534441089	chr14:81877862-81877863	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs547829106	chr14:81877869-81877870	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs143779951	chr14:81877895-81877896	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs148136570	chr14:81877915-81877916	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs187020163	chr14:81877968-81877969	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs575647238	chr14:81877975-81877976	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs559309201	chr14:81878012-81878013	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs12432021	chr14:81878043-81878044	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs568087073	chr14:81878056-81878057	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs573094639	chr14:81878063-81878064	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs191797213	chr14:81878131-81878132	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs144143760	chr14:81878138-81878139	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs529240982	chr14:81878145-81878146	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs76880282	chr14:81878212-81878213	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16608533	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Glioblastoma	21080181	CNVD
Gastric cancer	16891809	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	20164920	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81836400-81885800	Weak transcription	Gastric	stomach
2	chr14:81852800-81899800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:81861400-81889400	Weak transcription	Fetal Kidney	kidney
4	chr14:81862800-81881400	Weak transcription	Fetal Intestine Small	intestine
5	chr14:81864400-81893600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:81865000-81884600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:81865000-81885600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:81865000-81889400	Weak transcription	Ovary	ovary
9	chr14:81865000-81892400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:81867600-81892000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:81867800-81889800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:81868400-81884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:81868800-81881600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:81868800-81893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:81869200-81879200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:81869400-81880600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:81873400-81879200	Weak transcription	Placenta	Placenta
18	chr14:81873400-81880400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:81873600-81878400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:81873600-81878400	Weak transcription	HSMMtube	muscle
21	chr14:81873600-81886000	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:81874000-81880400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:81874000-81880800	Weak transcription	Psoas Muscle	Psoas
24	chr14:81874000-81882800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr14:81874400-81882600	Weak transcription	Adipose Nuclei	Adipose
26	chr14:81874800-81892600	Weak transcription	Hela-S3	cervix
27	chr14:81876400-81878600	Weak transcription	K562	blood
28	chr14:81876800-81877600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr14:81876800-81877800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:81876800-81877800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:81876800-81884200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:81877600-81879200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:81877800-81878600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:81877800-81879200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:81877800-81879200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:81878400-81879800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:81878600-81879600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
38	chr14:81878600-81881200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:81878600-81882000	Strong transcription	K562	blood
40	chr14:81878800-81879200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr14:81878800-81879400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:81879200-81879400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:81879200-81879400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:81879200-81879400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:81879200-81879400	Bivalent Enhancer	Placenta	Placenta
46	chr14:81879200-81879600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:81879200-81880800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr14:81879200-81881200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr14:81879400-81880800	Weak transcription	Placenta	Placenta
50	chr14:81879400-81884600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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