Variant report

Variant	esv3526101
Chromosome Location	chr19:21054000-21056206
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21051172..21052986-chr19:21053944..21056414,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151015284	chr19:21054005-21054006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs550503411	chr19:21054035-21054036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs183396178	chr19:21054054-21054055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs532821254	chr19:21054118-21054119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs552924176	chr19:21054131-21054132	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs558445967	chr19:21054141-21054142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs62123199	chr19:21054155-21054156	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs372930511	chr19:21054156-21054157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs548691416	chr19:21054223-21054224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs62123200	chr19:21054227-21054228	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs140810350	chr19:21054238-21054239	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs62123201	chr19:21054276-21054277	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs373315240	chr19:21054305-21054306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs577181987	chr19:21054306-21054307	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs557829214	chr19:21054314-21054315	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs577759849	chr19:21054317-21054318	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs377505588	chr19:21054321-21054322	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs572694993	chr19:21054324-21054325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs62123202	chr19:21054325-21054326	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs561737944	chr19:21054335-21054336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs186604291	chr19:21054344-21054345	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs543988750	chr19:21054380-21054381	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs114138395	chr19:21054383-21054384	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs114581441	chr19:21054406-21054407	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs552887195	chr19:21054429-21054430	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs560129923	chr19:21054450-21054451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs533890046	chr19:21054455-21054456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs528693687	chr19:21054472-21054473	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs115160882	chr19:21054473-21054474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs17679977	chr19:21054492-21054493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs17618068	chr19:21054497-21054498	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs150148887	chr19:21054517-21054518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs576733367	chr19:21054587-21054588	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs570498765	chr19:21054591-21054592	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs73005097	chr19:21054617-21054618	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs552848720	chr19:21054633-21054634	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs566382323	chr19:21054634-21054635	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs535372436	chr19:21054650-21054651	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs555505403	chr19:21054709-21054710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs575372578	chr19:21054807-21054808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs147791478	chr19:21054864-21054865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs557600827	chr19:21054885-21054886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs577703115	chr19:21054888-21054889	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs190029008	chr19:21054893-21054894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs200916041	chr19:21054898-21054899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs7256449	chr19:21054899-21054900	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs560190765	chr19:21054908-21054909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs182954492	chr19:21054941-21054942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs542172116	chr19:21054974-21054975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs562279301	chr19:21054994-21054995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21049400-21071800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr19:21052200-21063600	ZNF genes & repeats	Adipose Nuclei	Adipose

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