Variant report

Variant	esv3526726
Chromosome Location	chr19:21074300-21097346
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21086946..21088802-chr19:21210415..21213328,2	MCF-7	breast:

Extended variants
information (count: 954 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:954 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527296290	chr19:21074327-21074328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs557761587	chr19:21074328-21074329	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs12973946	chr19:21074329-21074330	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs561961518	chr19:21074357-21074358	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs56119047	chr19:21074363-21074364	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs188124341	chr19:21074377-21074378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs553988698	chr19:21074393-21074394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs144275986	chr19:21074426-21074427	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs146663712	chr19:21074441-21074442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs371123779	chr19:21074442-21074443	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs76148286	chr19:21074447-21074448	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs148756928	chr19:21074508-21074509	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs143582799	chr19:21074537-21074538	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs370142970	chr19:21074562-21074563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs146774570	chr19:21074629-21074630	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs139520486	chr19:21074649-21074650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs568792184	chr19:21074661-21074662	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs531229732	chr19:21074662-21074663	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs550912453	chr19:21074667-21074668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs191424664	chr19:21074668-21074669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs539603395	chr19:21074669-21074670	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs117141530	chr19:21074672-21074673	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs566930762	chr19:21074721-21074722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs117665550	chr19:21074807-21074808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs143455594	chr19:21074842-21074843	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs575596308	chr19:21074843-21074844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs544597116	chr19:21074868-21074869	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs376649179	chr19:21074873-21074874	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs140279836	chr19:21074888-21074889	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs578008763	chr19:21074934-21074935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs150357101	chr19:21074955-21074956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs386807719	chr19:21074971-21074972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs144945298	chr19:21074972-21074973	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs184808011	chr19:21074976-21074977	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs189461179	chr19:21075007-21075008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs531164917	chr19:21075021-21075022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs66886362	chr19:21075033-21075034	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs570776515	chr19:21075039-21075040	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs533467755	chr19:21075067-21075068	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs539768946	chr19:21075097-21075098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs34659606	chr19:21075106-21075107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs546769952	chr19:21075113-21075114	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs565545281	chr19:21075119-21075120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs566989626	chr19:21075126-21075127	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs181449707	chr19:21075162-21075163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs369280684	chr19:21075174-21075175	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs372715003	chr19:21075175-21075176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs527305461	chr19:21075177-21075178	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs374948206	chr19:21075178-21075179	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs143233939	chr19:21075190-21075191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21063400-21075600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
2	chr19:21073800-21075600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:21075000-21075400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:21075600-21078800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr19:21078800-21081200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:21078800-21082600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:21081800-21082800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr19:21085800-21086200	ZNF genes & repeats	Pancreas	Pancrea
9	chr19:21086600-21087800	ZNF genes & repeats	Fetal Brain Male	brain
10	chr19:21087800-21095400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:21089400-21090200	ZNF genes & repeats	Pancreas	Pancrea
12	chr19:21089600-21090000	ZNF genes & repeats	Fetal Heart	heart
13	chr19:21089800-21090600	ZNF genes & repeats	Liver	Liver
14	chr19:21090000-21090400	Weak transcription	Fetal Heart	heart
15	chr19:21090400-21091000	Active TSS	Fetal Heart	heart
16	chr19:21091800-21094000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr19:21093600-21097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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