Variant report

Variant	esv3528098
Chromosome Location	chr10:39101433-39107830
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1163 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:1163 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74184673	chr10:39101443-39101444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs543752652	chr10:39101448-39101449	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs563544637	chr10:39101452-39101453	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs532145253	chr10:39101460-39101461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs552158672	chr10:39101468-39101469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs559301041	chr10:39101481-39101482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs71500483	chr10:39101491-39101492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs112702350	chr10:39101504-39101505	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs200227445	chr10:39101509-39101510	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs542707591	chr10:39101512-39101513	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs201412364	chr10:39101521-39101522	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs567779696	chr10:39101524-39101525	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs536829256	chr10:39101534-39101535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs550065653	chr10:39101543-39101544	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs113712698	chr10:39101544-39101545	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs569974598	chr10:39101549-39101550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs2925606	chr10:39101553-39101554	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs558574503	chr10:39101554-39101555	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs566041780	chr10:39101563-39101564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs74739461	chr10:39101564-39101565	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs555010902	chr10:39101567-39101568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs574565955	chr10:39101568-39101569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs113752198	chr10:39101581-39101582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs557300034	chr10:39101597-39101598	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs369850393	chr10:39101615-39101616	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs577259329	chr10:39101619-39101620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs546100961	chr10:39101625-39101626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs559121344	chr10:39101627-39101628	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs372123629	chr10:39101628-39101629	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs71500484	chr10:39101636-39101637	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs528056724	chr10:39101644-39101645	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs112702336	chr10:39101645-39101646	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs201903398	chr10:39101652-39101653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs374956717	chr10:39101657-39101658	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs79343620	chr10:39101665-39101666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs541583245	chr10:39101672-39101673	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs71500485	chr10:39101673-39101674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs61840100	chr10:39101682-39101683	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs71500478	chr10:39101683-39101684	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs61840101	chr10:39101692-39101693	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs561777479	chr10:39101693-39101694	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs530241524	chr10:39101699-39101700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs201767339	chr10:39101702-39101703	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs61840102	chr10:39101708-39101709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs71500486	chr10:39101743-39101744	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs71500487	chr10:39101752-39101753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs113638607	chr10:39101756-39101757	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs550002625	chr10:39101758-39101759	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs569912120	chr10:39101764-39101765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs112054052	chr10:39101766-39101767	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
3	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
4	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
6	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
9	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
11	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
13	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
25	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
29	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
30	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
31	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
33	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
36	chr10:39090200-39101800	ZNF genes & repeats	Brain Angular Gyrus	brain
37	chr10:39092400-39101800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
38	chr10:39093800-39101600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr10:39094000-39101800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
42	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
43	chr10:39096200-39102200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:39096400-39101600	ZNF genes & repeats	Spleen	Spleen
45	chr10:39096400-39102200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:39097200-39101800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:39098000-39101800	ZNF genes & repeats	NH-A	brain
49	chr10:39100400-39101800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr10:39100400-39101800	ZNF genes & repeats	HSMMtube	muscle

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