Variant report

Variant	esv3528233
Chromosome Location	chr18:14803902-14810200
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30B-8	chr18:14808550-14808578	NONHSAT058529
2	lnc-ANKRD30B-8	chr18:14808671-14808730	NONHSAT058529

Variant related genes	Relation type
GNS	miRNA target sites
GOLGA3	miRNA target sites

Extended variants
information (count: 324 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:324 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533949903	chr18:14804268-14804269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs554123210	chr18:14804274-14804275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112867244	chr18:14804392-14804393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567683274	chr18:14804394-14804395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536749571	chr18:14804396-14804397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556520767	chr18:14804402-14804403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs377002983	chr18:14804439-14804440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576719399	chr18:14804474-14804475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534481505	chr18:14804536-14804537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138609391	chr18:14804545-14804546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs199969395	chr18:14804548-14804549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs149399360	chr18:14804559-14804560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540258753	chr18:14804568-14804569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560087807	chr18:14804569-14804570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529017482	chr18:14804570-14804571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs542713605	chr18:14804571-14804572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200902903	chr18:14804585-14804586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562394445	chr18:14804595-14804596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531426725	chr18:14804612-14804613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551129415	chr18:14804624-14804625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571244575	chr18:14804627-14804628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs527562296	chr18:14804661-14804662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547521729	chr18:14804689-14804690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567642839	chr18:14804717-14804718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189739498	chr18:14804720-14804721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs144767994	chr18:14804755-14804756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs148565459	chr18:14804759-14804760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs556639847	chr18:14804772-14804773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141973112	chr18:14804779-14804780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370952324	chr18:14804805-14804806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577690279	chr18:14804816-14804817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147327572	chr18:14804825-14804826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs572821605	chr18:14804842-14804843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9303865	chr18:14804949-14804950	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs575508435	chr18:14804997-14804998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs181154103	chr18:14805012-14805013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs180677289	chr18:14805022-14805023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542233238	chr18:14805025-14805026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs562620878	chr18:14805078-14805079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531292275	chr18:14805083-14805084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544833400	chr18:14805115-14805116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564735207	chr18:14805123-14805124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186741540	chr18:14805132-14805133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547679819	chr18:14805241-14805242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs4075383	chr18:14805252-14805253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs530122108	chr18:14805272-14805273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs9748313	chr18:14805287-14805288	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs191154320	chr18:14805288-14805289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs539131445	chr18:14805307-14805308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552842304	chr18:14805341-14805342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Breast cancer	21364760	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	21922591	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	17377590	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Myelofibrosis	22110671	CNVD
Retinoblastoma	21504564	CNVD
Glioma	17123091	CNVD
Neurodevelopmental disorder	22521361	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14798200-14817600	Weak transcription	Osteobl	bone
2	chr18:14799000-14817600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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