Variant report

Variant	esv3528438
Chromosome Location	chr10:27223268-27228174
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:27226988-27227113	A549	lung:	n/a	n/a
2	CTCF	chr10:27226065-27226184	MCF-7	breast:	n/a	n/a
3	CTCF	chr10:27226080-27226230	GM12872	blood:	n/a	n/a
4	CTCF	chr10:27226069-27226163	MCF-7	breast:	n/a	n/a
5	CTCF	chr10:27226074-27226177	GM12892	blood:	n/a	n/a
6	CTCF	chr10:27226080-27226230	GM12868	blood:	n/a	n/a
7	CTCF	chr10:27226060-27226210	GM12865	blood:	n/a	n/a
8	CTCF	chr10:27226076-27226183	MCF-7	breast:	n/a	n/a
9	CTCF	chr10:27225900-27226050	GM12872	blood:	n/a	n/a
10	CTCF	chr10:27226098-27226178	GM12878	blood:	n/a	n/a
11	CTCF	chr10:27226020-27226170	GM12875	blood:	n/a	n/a
12	CTCF	chr10:27226099-27226179	GM12891	blood:	n/a	n/a
13	FOS	chr10:27227605-27227742	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr10:27227608-27227901	MCF10A-Er-Src	breast:	n/a	n/a
15	JUND	chr10:27227608-27227917	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr10:27225824-27225948	MCF-7	breast:	n/a	n/a
17	POLR2A	chr10:27225813-27225818	MCF-7	breast:	n/a	n/a
18	POLR2A	chr10:27223263-27223396	GM12878	blood:	n/a	n/a
19	SPI1	chr10:27223253-27223543	GM12891	blood:	n/a	n/a
20	SPI1	chr10:27223305-27223540	GM12878	blood:	n/a	n/a
21	SPI1	chr10:27223361-27223496	GM12878	blood:	n/a	n/a
22	SPI1	chr10:27223257-27223609	GM12891	blood:	n/a	n/a
23	STAT3	chr10:27226975-27227232	MCF10A-Er-Src	breast:	n/a	n/a
24	STAT3	chr10:27227594-27227794	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27228167..27230462-chr10:27233630..27235621,2	MCF-7	breast:

No data

Variant related genes	Relation type
LINC00202-1	TF binding region

Extended variants
information (count: 310 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:310 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201675934	chr10:27223274-27223275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs117573983	chr10:27223281-27223282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531585472	chr10:27223283-27223284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs562256244	chr10:27223292-27223293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73596331	chr10:27223302-27223303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs371842538	chr10:27223318-27223319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35120720	chr10:27223319-27223320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567507046	chr10:27223334-27223335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs112468009	chr10:27223345-27223346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138092914	chr10:27223346-27223347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553651263	chr10:27223357-27223358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576038245	chr10:27223401-27223402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544896611	chr10:27223416-27223417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570510479	chr10:27223427-27223428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112469050	chr10:27223452-27223453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555986112	chr10:27223453-27223454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189051709	chr10:27223462-27223463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535429396	chr10:27223542-27223543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555369571	chr10:27223554-27223555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs564292566	chr10:27223572-27223573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs370471716	chr10:27223573-27223574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs397846831	chr10:27223578-27223579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs35951564	chr10:27223579-27223580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs572094603	chr10:27223628-27223629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11015388	chr10:27223642-27223643	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs192960539	chr10:27223646-27223647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577356924	chr10:27223677-27223678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs185227363	chr10:27223678-27223679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552112871	chr10:27223713-27223714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs531658653	chr10:27223714-27223715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs61848656	chr10:27223741-27223742	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs187233712	chr10:27223775-27223776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs527685235	chr10:27223862-27223863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191683524	chr10:27223975-27223976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570775039	chr10:27223979-27223980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539237485	chr10:27224015-27224016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549983809	chr10:27224072-27224073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569769099	chr10:27224087-27224088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535515292	chr10:27224130-27224131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555506478	chr10:27224138-27224139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs183784181	chr10:27224152-27224153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188127113	chr10:27224154-27224155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554147006	chr10:27224157-27224158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs180849940	chr10:27224165-27224166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546193668	chr10:27224166-27224167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs563070139	chr10:27224170-27224171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185736953	chr10:27224178-27224179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375847043	chr10:27224180-27224181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61848657	chr10:27224205-27224206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs73596332	chr10:27224221-27224222	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21525872	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27220600-27228000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:27220600-27234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:27220800-27225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27220800-27226400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:27220800-27235200	Weak transcription	Gastric	stomach
6	chr10:27225800-27226200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:27225800-27226600	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:27226200-27228200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:27226400-27226600	Enhancers	Fetal Muscle Leg	muscle
10	chr10:27226600-27227400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:27226600-27228600	Active TSS	Fetal Muscle Leg	muscle
12	chr10:27227400-27228000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:27227400-27228800	Active TSS	Fetal Muscle Trunk	muscle
14	chr10:27227800-27228400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:27227800-27228600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:27227800-27229200	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr10:27228000-27229200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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