Variant report

Variant	esv3584519
Chromosome Location	chr4:100323870-100477462
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1234)
CpG islands
(count:550)
Chromatin interactive
region (count:51)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1234 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:100458228-100458410	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:100326684-100326994	HepG2	liver:	n/a	n/a
3	ARID3A	chr4:100324103-100325245	HepG2	liver:	n/a	n/a
4	ATF2	chr4:100325506-100326473	GM12878	blood:	n/a	n/a
5	ATF2	chr4:100325543-100326370	GM12878	blood:	n/a	n/a
6	ATF2	chr4:100324699-100325143	GM12878	blood:	n/a	n/a
7	ATF3	chr4:100474118-100474322	K562	blood:	n/a	n/a
8	BACH1	chr4:100368181-100368634	H1-hESC	embryonic stem cell:	n/a	n/a
9	BATF	chr4:100324698-100325103	GM12878	blood:	n/a	n/a
10	BATF	chr4:100325409-100326360	GM12878	blood:	n/a	chr4:100325809-100325819
11	BATF	chr4:100368270-100368600	GM12878	blood:	n/a	chr4:100368397-100368408 chr4:100368398-100368408
12	BATF	chr4:100368267-100368583	GM12878	blood:	n/a	chr4:100368397-100368408 chr4:100368398-100368408
13	BATF	chr4:100325594-100326083	GM12878	blood:	n/a	chr4:100325809-100325819
14	BATF	chr4:100428594-100428784	GM12878	blood:	n/a	n/a
15	BCL11A	chr4:100325745-100326062	GM12878	blood:	n/a	chr4:100325808-100325817 chr4:100325807-100325816
16	BCL11A	chr4:100326107-100326415	GM12878	blood:	n/a	chr4:100326280-100326289
17	BCL11A	chr4:100324726-100325142	GM12878	blood:	n/a	n/a
18	BCL11A	chr4:100325594-100326419	GM12878	blood:	n/a	chr4:100325808-100325817 chr4:100326280-100326289 chr4:100325807-100325816
19	BCL3	chr4:100325639-100325997	GM12878	blood:	n/a	chr4:100325808-100325817 chr4:100325807-100325816
20	BCLAF1	chr4:100325678-100326390	GM12878	blood:	n/a	chr4:100325808-100325817 chr4:100326280-100326289 chr4:100325807-100325816
21	BCLAF1	chr4:100325562-100326480	GM12878	blood:	n/a	chr4:100325808-100325817 chr4:100326280-100326289 chr4:100325807-100325816
22	BHLHE40	chr4:100384916-100385112	GM12878	blood:	n/a	n/a
23	BHLHE40	chr4:100325661-100326414	GM12878	blood:	n/a	n/a
24	BHLHE40	chr4:100384049-100384345	GM12878	blood:	n/a	n/a
25	BRCA1	chr4:100373888-100373982	GM12878	blood:	n/a	n/a
26	BRCA1	chr4:100326705-100327074	HepG2	liver:	n/a	n/a
27	CEBPB	chr4:100334313-100335137	A549	lung:	n/a	chr4:100334487-100334496 chr4:100334485-100334498 chr4:100334487-100334496 chr4:100334487-100334496
28	CEBPB	chr4:100324761-100325149	HepG2	liver:	n/a	n/a
29	CEBPB	chr4:100380164-100380473	IMR90	lung:	n/a	chr4:100380301-100380312 chr4:100380300-100380313
30	CEBPB	chr4:100359346-100359419	K562	blood:	n/a	chr4:100359400-100359413 chr4:100359400-100359411
31	CEBPB	chr4:100380228-100380563	HepG2	liver:	n/a	chr4:100380301-100380312 chr4:100380300-100380313
32	CEBPB	chr4:100334315-100335148	IMR90	lung:	n/a	chr4:100334487-100334496 chr4:100334485-100334498 chr4:100334487-100334496 chr4:100334487-100334496
33	CEBPB	chr4:100334342-100334635	K562	blood:	n/a	chr4:100334487-100334496 chr4:100334485-100334498 chr4:100334487-100334496 chr4:100334487-100334496
34	CEBPB	chr4:100324796-100325113	HepG2	liver:	n/a	n/a
35	CEBPB	chr4:100474061-100474317	K562	blood:	n/a	chr4:100474223-100474234
36	CEBPB	chr4:100335519-100336059	MCF-7	breast:	n/a	n/a
37	CEBPB	chr4:100473541-100473736	HepG2	liver:	n/a	n/a
38	CEBPB	chr4:100474095-100474404	HepG2	liver:	n/a	chr4:100474223-100474234
39	CEBPB	chr4:100324779-100325140	HepG2	liver:	n/a	n/a
40	CEBPB	chr4:100372962-100373052	A549	lung:	n/a	n/a
41	CEBPB	chr4:100335481-100335978	MCF-7	breast:	n/a	n/a
42	CEBPB	chr4:100335773-100335972	A549	lung:	n/a	n/a
43	CEBPB	chr4:100474123-100474384	A549	lung:	n/a	chr4:100474223-100474234
44	CEBPB	chr4:100473980-100474460	HCT-116	colon:	n/a	chr4:100474223-100474234
45	CEBPB	chr4:100474067-100474401	IMR90	lung:	n/a	chr4:100474223-100474234
46	CEBPB	chr4:100450505-100450659	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr4:100474058-100474411	Hela-S3	cervix:	n/a	chr4:100474223-100474234
48	CEBPB	chr4:100325568-100326531	GM12878	blood:	n/a	n/a
49	CEBPB	chr4:100334308-100335127	HepG2	liver:	n/a	chr4:100334487-100334496 chr4:100334485-100334498 chr4:100334487-100334496 chr4:100334487-100334496
50	CEBPB	chr4:100380109-100380690	ECC-1	luminal epithelium:	n/a	chr4:100380301-100380312 chr4:100380300-100380313

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:100431894-100431944	HL-60	blood:	n/a
2	chr4:100431894-100431944	HL-60	blood:	n/a
3	chr4:100434274-100434324	PrEC	prostate:	n/a
4	chr4:100432162-100432212	MCF-7	breast:	n/a
5	chr4:100432266-100432316	SKMC	muscle:	n/a
6	chr4:100434274-100434324	LNCaP	prostate:	n/a
7	chr4:100368380-100368430	HPAEpiC	pulmonary alveolar:	n/a
8	chr4:100431894-100431944	PrEC	prostate:	n/a
9	chr4:100468301-100468351	HCPEpiC	choroid plexus:	n/a
10	chr4:100326030-100326080	ProgFib	skin:	n/a
11	chr4:100432162-100432212	ECC-1	luminal epithelium:	n/a
12	chr4:100368380-100368430	GM12892	blood:	n/a
13	chr4:100326030-100326080	PANC-1	pancreas:	n/a
14	chr4:100432266-100432316	HEEpiC	esophagus:	n/a
15	chr4:100357176-100357226	PANC-1	pancreas:	n/a
16	chr4:100431894-100431944	HRCEpiC	kidney:	n/a
17	chr4:100432162-100432212	AG04449	skin:	fetal
18	chr4:100432266-100432316	AG10803	skin:	n/a
19	chr4:100326030-100326080	HepG2	liver:	n/a
20	chr4:100468301-100468351	SK-N-SH	brain:	n/a
21	chr4:100368380-100368430	HNPCEpiC	eye:	n/a
22	chr4:100432162-100432212	AG09309	skin:	n/a
23	chr4:100356538-100356588	NHBE	bronchial:	n/a
24	chr4:100432162-100432212	HEK293	kidney:	embryo
25	chr4:100432162-100432212	PANC-1	pancreas:	n/a
26	chr4:100326030-100326080	PrEC	prostate:	n/a
27	chr4:100432162-100432212	CMK	blood:	n/a
28	chr4:100432266-100432316	PANC-1	pancreas:	n/a
29	chr4:100434274-100434324	HPAEpiC	pulmonary alveolar:	n/a
30	chr4:100357176-100357226	Jurkat	blood:	n/a
31	chr4:100356538-100356588	PFSK-1	brain:	n/a
32	chr4:100357176-100357226	MCF10A-Er-Src	breast:	n/a
33	chr4:100356538-100356588	IMR90	lung:	fetal
34	chr4:100431894-100431944	HepG2	liver:	n/a
35	chr4:100368380-100368430	AoSMC	blood vessel:	n/a
36	chr4:100368380-100368430	MCF-7	breast:	n/a
37	chr4:100432162-100432212	HL-60	blood:	n/a
38	chr4:100434274-100434324	SK-N-SH	brain:	n/a
39	chr4:100432162-100432212	AoSMC	blood vessel:	n/a
40	chr4:100368380-100368430	AG10803	skin:	n/a
41	chr4:100357176-100357226	HEK293	kidney:	embryo
42	chr4:100326030-100326080	LNCaP	prostate:	n/a
43	chr4:100431894-100431944	Hepatocyte	liver:	n/a
44	chr4:100468301-100468351	BE2_C	brain:	n/a
45	chr4:100431894-100431944	MCF10A-Er-Src	breast:	n/a
46	chr4:100432162-100432212	Jurkat	blood:	n/a
47	chr4:100431894-100431944	HNPCEpiC	eye:	n/a
48	chr4:100468301-100468351	H1-hESC	embryonic stem cell:	embryo
49	chr4:100468301-100468351	HCF	heart:	n/a
50	chr4:100326030-100326080	NHDF-neo	bronchial:	n/a

(count:51 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:100039119..100039756-chr4:100378505..100379028,2	MCF-7	breast:
2	chr4:100473367..100474928-chr4:100870954..100872899,2	K562	blood:
3	chr4:100326668..100327341-chr4:100729597..100730107,2	K562	blood:
4	chr4:100039211..100039845-chr4:100326145..100326879,2	MCF-7	breast:
5	chr4:100458736..100461686-chr4:100868132..100870522,2	K562	blood:
6	chr4:100457175..100460170-chr4:100461778..100463584,2	K562	blood:
7	chr4:100350531..100352206-chr4:100353778..100356045,2	K562	blood:
8	chr4:100421451..100423053-chr4:100424035..100425977,2	K562	blood:
9	chr4:100475856..100477829-chr4:100479936..100482036,2	MCF-7	breast:
10	chr4:100333015..100337479-chr4:100337485..100340036,5	K562	blood:
11	chr4:100459336..100463167-chr4:100464703..100466787,3	K562	blood:
12	chr4:100384427..100386457-chr4:100387050..100389480,2	K562	blood:
13	chr4:100442006..100443922-chr4:100445466..100447568,2	K562	blood:
14	chr4:100360736..100361324-chr4:100378145..100379030,2	MCF-7	breast:
15	chr4:100421451..100423053-chr4:100424035..100425977,2	K562	blood:
16	chr4:100389704..100392156-chr4:100395254..100396891,2	K562	blood:
17	chr4:100360403..100361217-chr4:100383908..100384668,4	MCF-7	breast:
18	chr4:100474957..100476980-chr4:100770765..100773597,2	K562	blood:
19	chr4:100010287..100011807-chr4:100330778..100333619,2	MCF-7	breast:
20	chr4:100039143..100039863-chr4:100383697..100384671,5	MCF-7	breast:
21	chr4:100421442..100423053-chr4:100423504..100425535,2	K562	blood:
22	chr4:100336741..100337342-chr4:100383743..100384304,2	MCF-7	breast:
23	chr20:52481362..52483334-chr4:100456733..100459317,2	MCF-7	breast:
24	chr4:99915893..99916919-chr4:100326329..100327016,3	K562	blood:
25	chr4:100038972..100039679-chr4:100326321..100327345,4	K562	blood:
26	chr4:100122648..100123636-chr4:100326377..100326984,3	MCF-7	breast:
27	chr4:100433956..100434757-chr5:13844267..13844959,2	MCF-7	breast:
28	chr4:100360736..100361324-chr4:100378145..100379030,2	MCF-7	breast:
29	chr4:100452738..100454334-chr4:100458012..100459573,2	K562	blood:
30	chr4:100459336..100463167-chr4:100464703..100466787,3	K562	blood:
31	chr4:100452738..100454334-chr4:100458012..100459573,2	K562	blood:
32	chr4:100122531..100123516-chr4:100326382..100326915,3	MCF-7	breast:
33	chr4:100008556..100011028-chr4:100365658..100368311,2	MCF-7	breast:
34	chr4:100305669..100308153-chr4:100323614..100325845,2	K562	blood:
35	chr4:100008427..100010318-chr4:100377413..100380370,2	MCF-7	breast:
36	chr4:100384427..100386457-chr4:100387050..100389480,2	K562	blood:
37	chr4:99977313..99977837-chr4:100383794..100384294,2	MCF-7	breast:
38	chr4:100477155..100479164-chr4:100484315..100486411,2	K562	blood:
39	chr4:100457175..100460170-chr4:100461778..100463584,2	K562	blood:
40	chr4:100446974..100449213-chr4:100450825..100453764,2	MCF-7	breast:
41	chr4:100360403..100361217-chr4:100383908..100384668,4	MCF-7	breast:
42	chr4:100323711..100324455-chr4:100383736..100384261,2	MCF-7	breast:
43	chr4:100442006..100443922-chr4:100445466..100447568,2	K562	blood:
44	chr4:100449160..100451370-chr4:100870396..100872457,2	K562	blood:
45	chr4:100389704..100392156-chr4:100395254..100396891,2	K562	blood:
46	chr4:100476515..100478400-chr4:100480136..100482973,2	K562	blood:
47	chr4:100336916..100337639-chr4:100383741..100384315,2	MCF-7	breast:
48	chr4:100446974..100449213-chr4:100450825..100453764,2	MCF-7	breast:
49	chr4:100421442..100423053-chr4:100423504..100425535,2	K562	blood:
50	chr4:100472716..100475431-chr4:100812168..100815129,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf17-1	chr4:100407744-100407944	ucscGeneNc_uc003huq_2
2	lnc-C4orf17-1	chr4:100394109-100394243	ucscGeneNc_uc003huq_2
3	lnc-MTTP-1	chr4:100440425-100440550	l_2693_chr4:100440424-100441494_placenta
4	lnc-C4orf17-1	chr4:100403682-100403990	ucscGeneNc_uc003huq_2
5	lnc-MTTP-1	chr4:100440649-100441494	l_2693_chr4:100440424-100441494_placenta
6	lnc-C4orf17-1	chr4:100415142-100415230	ucscGeneNc_uc003huq_2
7	lnc-C4orf17-1	chr4:100407237-100407285	ucscGeneNc_uc003huq_2
8	lnc-C4orf17-1	chr4:100414305-100414435	ucscGeneNc_uc003huq_2
9	lnc-ADH7-1	chr4:100323990-100324091	NONHSAT097533

No data

Variant related genes	Relation type
ENSG00000250300	TF binding region
ADH7	TF binding region
C4orf17	TF binding region
ENSG00000250300	CpG island
ADH7	CpG island
C4orf17	CpG island
ENSG00000245322	chromatin interactions
ENSG00000246090	chromatin interactions
ENSG00000197894	chromatin interactions
ENSG00000145331	chromatin interactions
ENSG00000138823	chromatin interactions
ENSG00000164024	chromatin interactions
ENSG00000164032	chromatin interactions
ENSG00000196344	chromatin interactions

Extended variants
information (count: 4072 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:4072 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1553434	chr4:100323870-100323871	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs67445745	chr4:100323878-100323879	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs548564207	chr4:100323879-100323880	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566883918	chr4:100323888-100323889	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs534323484	chr4:100323948-100323949	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532627629	chr4:100323961-100323962	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553365439	chr4:100323970-100323971	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs111456060	chr4:100324000-100324001	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs538842652	chr4:100324032-100324033	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs557560369	chr4:100324048-100324049	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs575805735	chr4:100324056-100324057	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs17587689	chr4:100324071-100324072	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs555108181	chr4:100324083-100324084	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs7435475	chr4:100324098-100324099	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573226576	chr4:100324103-100324104	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114886891	chr4:100324127-100324128	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs191680643	chr4:100324250-100324251	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372309949	chr4:100324262-100324263	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552370037	chr4:100324314-100324315	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs400144	chr4:100324353-100324354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116377936	chr4:100324360-100324361	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs530290252	chr4:100324363-100324364	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs544852973	chr4:100324373-100324374	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs17028990	chr4:100324421-100324422	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs36125287	chr4:100324437-100324438	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs2584462	chr4:100324464-100324465	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs386677737	chr4:100324473-100324474	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs34845960	chr4:100324475-100324476	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs71612690	chr4:100324481-100324482	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs528043435	chr4:100324484-100324485	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs530972780	chr4:100324526-100324527	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs546608715	chr4:100324537-100324538	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs116784711	chr4:100324564-100324565	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs539367418	chr4:100324594-100324595	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs545428469	chr4:100324637-100324638	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs539552374	chr4:100324644-100324645	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs552557015	chr4:100324758-100324759	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs571574933	chr4:100324792-100324793	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs569431510	chr4:100324797-100324798	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs375997920	chr4:100324892-100324893	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs17028991	chr4:100324991-100324992	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs555071344	chr4:100324998-100324999	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs187316225	chr4:100325052-100325053	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs193115594	chr4:100325129-100325130	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs528417469	chr4:100325140-100325141	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs114037876	chr4:100325143-100325144	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs113203332	chr4:100325198-100325199	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs538901382	chr4:100325239-100325240	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs145342086	chr4:100325257-100325258	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs185580031	chr4:100325266-100325267	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	20838587	CNVD

Chromatin state (count:591 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100317000-100324000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:100317000-100324800	Weak transcription	HSMM	muscle
3	chr4:100317200-100325000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:100317400-100325000	Weak transcription	NHLF	lung
5	chr4:100320800-100325400	Weak transcription	Aorta	Aorta
6	chr4:100321600-100324600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:100321800-100324000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:100322000-100324200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:100322000-100326800	Enhancers	Fetal Intestine Large	intestine
10	chr4:100322000-100326800	Enhancers	Fetal Intestine Small	intestine
11	chr4:100322200-100325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:100322800-100324400	Enhancers	Liver	Liver
13	chr4:100322800-100324400	Weak transcription	NHDF-Ad	bronchial
14	chr4:100323000-100324000	Weak transcription	Adipose Nuclei	Adipose
15	chr4:100323000-100327000	Enhancers	Stomach Mucosa	stomach
16	chr4:100323400-100324000	Weak transcription	Colonic Mucosa	Colon
17	chr4:100323400-100324600	Enhancers	HepG2	liver
18	chr4:100323600-100325800	Weak transcription	Ovary	ovary
19	chr4:100323800-100324000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr4:100323800-100326600	Enhancers	Fetal Kidney	kidney
21	chr4:100323800-100326800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:100323800-100326800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:100324000-100324600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:100324000-100324600	Enhancers	Colonic Mucosa	Colon
25	chr4:100324000-100324800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr4:100324000-100325000	Enhancers	Duodenum Mucosa	Duodenum
27	chr4:100324000-100325000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:100324000-100325800	Enhancers	Fetal Lung	lung
29	chr4:100324000-100326800	Enhancers	Adipose Nuclei	Adipose
30	chr4:100324000-100327200	Enhancers	Small Intestine	intestine
31	chr4:100324200-100324600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:100324200-100324600	Enhancers	Pancreas	Pancrea
33	chr4:100324200-100325000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:100324200-100325400	Enhancers	Osteobl	bone
35	chr4:100324200-100326200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:100324200-100327200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:100324400-100324600	Enhancers	Fetal Muscle Leg	muscle
38	chr4:100324400-100324600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr4:100324400-100324800	Flanking Active TSS	Liver	Liver
40	chr4:100324400-100326800	Enhancers	NHDF-Ad	bronchial
41	chr4:100324600-100324800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr4:100324600-100324800	Flanking Active TSS	HepG2	liver
43	chr4:100324600-100325000	Enhancers	GM12878-XiMat	blood
44	chr4:100324600-100325200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:100324600-100325800	Weak transcription	Colonic Mucosa	Colon
46	chr4:100324600-100325800	Weak transcription	Pancreas	Pancrea
47	chr4:100324600-100326600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:100324600-100326800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:100324600-100326800	Enhancers	NH-A	brain
50	chr4:100324600-100332400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links