Variant report

Variant	esv3693041
Chromosome Location	chr9:115852715-115867276
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:115853301..115854826-chr9:115855514..115857498,2	K562	blood:
2	chr9:115857627..115859228-chr9:115862947..115865941,2	MCF-7	breast:
3	chr9:115856198..115858417-chr9:115859044..115860820,2	MCF-7	breast:
4	chr9:115853301..115854826-chr9:115855514..115857498,2	K562	blood:
5	chr9:115856198..115858417-chr9:115859044..115860820,2	MCF-7	breast:
6	chr9:115857627..115859228-chr9:115862947..115865941,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP37-2	chr9:115865618-115872433	ENSG00000225684
2	lnc-ZFP37-2	chr9:115867003-115872433	ENSG00000225684
3	lnc-ZFP37-2	chr9:115867003-115872433	NONHSAT134034

No data

Extended variants
information (count: 557 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:557 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7022165	chr9:115852715-115852716	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs542229501	chr9:115852720-115852721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs562069609	chr9:115852723-115852724	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs527752368	chr9:115852747-115852748	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs546487381	chr9:115852748-115852749	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs376311090	chr9:115852754-115852755	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs144691088	chr9:115852761-115852762	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs532172872	chr9:115852767-115852768	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs552096034	chr9:115852770-115852771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs116987678	chr9:115852775-115852776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs568154781	chr9:115852779-115852780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs535463775	chr9:115852790-115852791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs183554371	chr9:115852791-115852792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs568075286	chr9:115852802-115852803	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs533840298	chr9:115852803-115852804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs2811243	chr9:115852820-115852821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs113257706	chr9:115852852-115852853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs554073342	chr9:115852859-115852860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs577557383	chr9:115852862-115852863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112031935	chr9:115852867-115852868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs540028321	chr9:115852874-115852875	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs5900033	chr9:115852876-115852877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs10981626	chr9:115852910-115852911	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs144445554	chr9:115852914-115852915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs12551771	chr9:115852931-115852932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs193163875	chr9:115852940-115852941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs1970026	chr9:115852947-115852948	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs541561791	chr9:115852951-115852952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs112111800	chr9:115852975-115852976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs557200820	chr9:115852976-115852977	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs5900034	chr9:115852977-115852978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs386737756	chr9:115852978-115852979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs1970025	chr9:115852979-115852980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs532210554	chr9:115852985-115852986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs551934934	chr9:115852993-115852994	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs549294135	chr9:115853000-115853001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs562466502	chr9:115853051-115853052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs151186194	chr9:115853052-115853053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs184607630	chr9:115853054-115853055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs140403633	chr9:115853060-115853061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs533549110	chr9:115853082-115853083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs72500654	chr9:115853084-115853085	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs570544836	chr9:115853095-115853096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs538509018	chr9:115853108-115853109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs188338956	chr9:115853111-115853112	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs192757546	chr9:115853112-115853113	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs556766932	chr9:115853118-115853119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs576818336	chr9:115853120-115853121	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs72500655	chr9:115853149-115853150	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs183571374	chr9:115853159-115853160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115852200-115852800	ZNF genes & repeats	Pancreas	Pancrea
2	chr9:115852200-115853000	ZNF genes & repeats	Spleen	Spleen
3	chr9:115852400-115852800	ZNF genes & repeats	Right Atrium	heart
4	chr9:115852400-115853800	ZNF genes & repeats	Liver	Liver
5	chr9:115854400-115854800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:115854800-115855200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:115855200-115855600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:115855600-115857200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:115857000-115857600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:115857200-115858400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:115858400-115859000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:115858800-115859000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:115858800-115859000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
14	chr9:115858800-115859000	Enhancers	Gastric	stomach
15	chr9:115859000-115861800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:115859000-115862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:115861600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:115861800-115862400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:115862400-115862600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:115862400-115862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:115862600-115866000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:115862800-115863600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:115863600-115867000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:115866000-115867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:115867000-115867400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:115867000-115867600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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