Variant report

Variant	esv3693433
Chromosome Location	chr1:62429665-62448451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr1:62433476-62433726	K562	blood:	n/a	n/a
2	BACH1	chr1:62446381-62446560	K562	blood:	n/a	n/a
3	BACH1	chr1:62446282-62446790	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr1:62437864-62437982	K562	blood:	n/a	n/a
5	CEBPB	chr1:62446583-62446870	HepG2	liver:	n/a	chr1:62446734-62446745 chr1:62446733-62446746 chr1:62446733-62446746
6	CEBPB	chr1:62440045-62440218	K562	blood:	n/a	n/a
7	CEBPB	chr1:62440023-62440267	HepG2	liver:	n/a	n/a
8	CEBPB	chr1:62440045-62440224	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr1:62432189-62432433	H1-hESC	embryonic stem cell:	n/a	n/a
10	CEBPB	chr1:62446355-62446912	IMR90	lung:	n/a	chr1:62446734-62446745 chr1:62446733-62446746 chr1:62446733-62446746
11	CEBPB	chr1:62446324-62446874	H1-hESC	embryonic stem cell:	n/a	chr1:62446734-62446745 chr1:62446733-62446746 chr1:62446733-62446746
12	CEBPB	chr1:62446313-62446586	K562	blood:	n/a	n/a
13	CEBPB	chr1:62446295-62446907	K562	blood:	n/a	chr1:62446734-62446745 chr1:62446733-62446746 chr1:62446733-62446746
14	CHD2	chr1:62446418-62446581	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD2	chr1:62448125-62448179	GM12878	blood:	n/a	n/a
16	CTCF	chr1:62446374-62446425	Fibrobl	skin:	n/a	n/a
17	CTCF	chr1:62440228-62440270	Kidney_OC	kidney:	n/a	n/a
18	CUX1	chr1:62433241-62433259	K562	blood:	n/a	n/a
19	E2F4	chr1:62446465-62446664	MCF10A-Er-Src	breast:	n/a	chr1:62446509-62446518
20	E2F4	chr1:62438634-62439009	MCF10A-Er-Src	breast:	n/a	n/a
21	E2F4	chr1:62440236-62440368	MCF10A-Er-Src	breast:	n/a	n/a
22	EP300	chr1:62433430-62433743	SK-N-SH_RA	brain:	n/a	chr1:62433649-62433657 chr1:62433655-62433664 chr1:62433702-62433716 chr1:62433479-62433493
23	EP300	chr1:62432611-62432792	K562	blood:	n/a	n/a
24	EP300	chr1:62433418-62433730	SK-N-SH_RA	brain:	n/a	chr1:62433649-62433657 chr1:62433655-62433664 chr1:62433702-62433716 chr1:62433479-62433493
25	ESR1	chr1:62432481-62432805	T-47D	breast:	n/a	n/a
26	ESR1	chr1:62432573-62432749	T-47D	breast:	n/a	n/a
27	FOS	chr1:62438813-62439128	MCF10A-Er-Src	breast:	n/a	n/a
28	FOS	chr1:62446342-62446638	MCF10A-Er-Src	breast:	n/a	chr1:62446463-62446475 chr1:62446464-62446474
29	FOS	chr1:62440074-62440275	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr1:62446297-62446593	MCF10A-Er-Src	breast:	n/a	chr1:62446463-62446475 chr1:62446464-62446474
31	FOS	chr1:62446306-62446593	MCF10A-Er-Src	breast:	n/a	chr1:62446463-62446475 chr1:62446464-62446474
32	FOS	chr1:62440039-62440275	MCF10A-Er-Src	breast:	n/a	n/a
33	FOS	chr1:62438769-62439219	MCF10A-Er-Src	breast:	n/a	n/a
34	FOS	chr1:62440055-62440275	MCF10A-Er-Src	breast:	n/a	n/a
35	FOS	chr1:62446306-62446560	MCF10A-Er-Src	breast:	n/a	chr1:62446463-62446475 chr1:62446464-62446474
36	FOS	chr1:62440032-62440239	MCF10A-Er-Src	breast:	n/a	n/a
37	FOS	chr1:62438816-62439128	MCF10A-Er-Src	breast:	n/a	n/a
38	FOXA1	chr1:62441400-62441592	T-47D	breast:	n/a	n/a
39	FOXA1	chr1:62441344-62441639	T-47D	breast:	n/a	n/a
40	FOXP2	chr1:62446307-62446517	SK-N-MC	brain:	n/a	n/a
41	GATA2	chr1:62433432-62433718	SH-SY5Y	brain:	n/a	n/a
42	GATA2	chr1:62445408-62445710	K562	blood:	n/a	n/a
43	GATA3	chr1:62441303-62441694	T-47D	breast:	n/a	n/a
44	GATA3	chr1:62433139-62433695	SH-SY5Y	brain:	n/a	chr1:62433143-62433150 chr1:62433141-62433150 chr1:62433143-62433150 chr1:62433141-62433151 chr1:62433143-62433150
45	GATA3	chr1:62448112-62448183	SH-SY5Y	brain:	n/a	n/a
46	GATA3	chr1:62441311-62441758	T-47D	breast:	n/a	n/a
47	GATA3	chr1:62432959-62433967	SK-N-SH	brain:	n/a	chr1:62433143-62433150 chr1:62433141-62433150 chr1:62433143-62433150 chr1:62433136-62433157 chr1:62433138-62433154 chr1:62433141-62433151 chr1:62433143-62433150
48	GATA3	chr1:62433236-62433904	SK-N-SH	brain:	n/a	n/a
49	JUND	chr1:62433370-62433855	SK-N-SH	brain:	n/a	chr1:62433503-62433512
50	JUND	chr1:62433358-62433932	SK-N-SH	brain:	n/a	chr1:62433503-62433512

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:62445916-62445966	Hela-S3	cervix:	n/a
2	chr1:62445916-62445966	Hela-S3	cervix:	n/a
3	chr1:62445916-62445966	HMEC	breast:	n/a
4	chr1:62445916-62445966	NHBE	bronchial:	n/a
5	chr1:62445916-62445966	SKMC	muscle:	n/a
6	chr1:62445916-62445966	K562	blood:	n/a
7	chr1:62445916-62445966	CMK	blood:	n/a
8	chr1:62445916-62445966	HEK293	kidney:	embryo
9	chr1:62445916-62445966	GM12878	blood:	n/a
10	chr1:62445916-62445966	PrEC	prostate:	n/a
11	chr1:62445916-62445966	NHDF-neo	bronchial:	n/a
12	chr1:62445916-62445966	HCM	heart:	n/a
13	chr1:62445916-62445966	BJ	skin:	n/a
14	chr1:62445916-62445966	HRE	kidney:	n/a
15	chr1:62445916-62445966	HIPEpiC	eye:	n/a
16	chr1:62445916-62445966	ovcar-3	ovarian:	n/a
17	chr1:62445916-62445966	LNCaP	prostate:	n/a
18	chr1:62445916-62445966	SK-N-MC	brain:	n/a
19	chr1:62445916-62445966	HEEpiC	esophagus:	n/a
20	chr1:62445916-62445966	HCT-116	colon:	n/a
21	chr1:62445916-62445966	Caco-2	colon:	n/a
22	chr1:62445916-62445966	AG10803	skin:	n/a
23	chr1:62445916-62445966	NH-A	brain:	n/a
24	chr1:62445916-62445966	HPAEpiC	pulmonary alveolar:	n/a
25	chr1:62445916-62445966	SK-N-SH	brain:	n/a
26	chr1:62445916-62445966	MCF-7	breast:	n/a
27	chr1:62445916-62445966	HL-60	blood:	n/a
28	chr1:62445916-62445966	IMR90	lung:	fetal
29	chr1:62445916-62445966	BE2_C	brain:	n/a
30	chr1:62445916-62445966	HUVEC	blood vessel:	n/a
31	chr1:62445916-62445966	HRCEpiC	kidney:	n/a
32	chr1:62445916-62445966	T-47D	breast:	n/a
33	chr1:62445916-62445966	GM19239	blood:	n/a
34	chr1:62445916-62445966	H1-hESC	embryonic stem cell:	embryo
35	chr1:62445916-62445966	ECC-1	luminal epithelium:	n/a
36	chr1:62445916-62445966	HAEpiC	amniotic membrane:	n/a
37	chr1:62445916-62445966	ProgFib	skin:	n/a
38	chr1:62445916-62445966	NB4	blood:	n/a
39	chr1:62445916-62445966	PANC-1	pancreas:	n/a
40	chr1:62445916-62445966	GM12892	blood:	n/a
41	chr1:62445916-62445966	AG04450	lung:	fetal
42	chr1:62445916-62445966	HCF	heart:	n/a
43	chr1:62445916-62445966	SAEC	small airway:	n/a
44	chr1:62445916-62445966	HRPEpiC	eye:	n/a
45	chr1:62445916-62445966	AG09319	gingival:	n/a
46	chr1:62445916-62445966	MCF10A-Er-Src	breast:	n/a
47	chr1:62445916-62445966	NT2-D1	testis:	n/a
48	chr1:62445916-62445966	HepG2	liver:	n/a
49	chr1:62445916-62445966	AoSMC	blood vessel:	n/a
50	chr1:62445916-62445966	U87	brain:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62444307..62446951-chr1:62447722..62450460,2	K562	blood:
2	chr1:62444307..62446951-chr1:62447722..62450460,2	K562	blood:

Variant related genes	Relation type
INADL	TF binding region
INADL	CpG island

Extended variants
information (count: 696 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:696 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10489968	chr1:62429665-62429666	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs150278222	chr1:62429701-62429702	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537427716	chr1:62429750-62429751	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11810952	chr1:62429765-62429766	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs532741946	chr1:62429768-62429769	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542469813	chr1:62429786-62429787	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563823909	chr1:62429840-62429841	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180836966	chr1:62429863-62429864	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs552828817	chr1:62429872-62429873	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs566119907	chr1:62429971-62429972	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11804927	chr1:62429989-62429990	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs2365735	chr1:62430033-62430034	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs186086965	chr1:62430060-62430061	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs564697343	chr1:62430094-62430095	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573516227	chr1:62430124-62430125	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs77519247	chr1:62430132-62430133	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546791892	chr1:62430141-62430142	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562072248	chr1:62430164-62430165	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs529272791	chr1:62430179-62430180	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs139621413	chr1:62430199-62430200	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs569845455	chr1:62430266-62430267	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs539825953	chr1:62430267-62430268	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536986341	chr1:62430302-62430303	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372188803	chr1:62430312-62430313	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs2482889	chr1:62430345-62430346	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs537268330	chr1:62430350-62430351	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534379902	chr1:62430351-62430352	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs2482890	chr1:62430400-62430401	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs6667051	chr1:62430401-62430402	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs535094983	chr1:62430425-62430426	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146065226	chr1:62430440-62430441	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575985078	chr1:62430457-62430458	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12095895	chr1:62430459-62430460	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11207879	chr1:62430467-62430468	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs11207880	chr1:62430473-62430474	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs12136886	chr1:62430477-62430478	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546538161	chr1:62430481-62430482	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139958274	chr1:62430505-62430506	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs72676283	chr1:62430506-62430507	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs150807968	chr1:62430509-62430510	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562040750	chr1:62430518-62430519	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs189285050	chr1:62430523-62430524	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544267169	chr1:62430536-62430537	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs61775619	chr1:62430571-62430572	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532977289	chr1:62430612-62430613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs139142396	chr1:62430641-62430642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs552070001	chr1:62430645-62430646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113778567	chr1:62430708-62430709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs528278943	chr1:62430709-62430710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74866652	chr1:62430754-62430755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Breast cancer	16620391	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
CNS Malformation Syndrome	17530927	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Colorectal cancer	20459617	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:178 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62385000-62494200	Weak transcription	Aorta	Aorta
2	chr1:62406600-62430200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:62409000-62436800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:62409200-62456000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:62409200-62456800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:62409200-62457000	Weak transcription	Fetal Intestine Large	intestine
7	chr1:62409200-62518600	Weak transcription	Pancreas	Pancrea
8	chr1:62409400-62458400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:62417800-62431600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:62418200-62446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:62418400-62441400	Weak transcription	Fetal Kidney	kidney
12	chr1:62418600-62432400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:62418600-62432400	Weak transcription	NHEK	skin
14	chr1:62418800-62432800	Weak transcription	HMEC	breast
15	chr1:62419600-62445800	Weak transcription	Left Ventricle	heart
16	chr1:62420800-62429800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:62422800-62432600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:62423400-62431200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:62423400-62433600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:62423600-62433800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:62423800-62432800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:62424000-62432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:62424200-62436600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:62424200-62494200	Weak transcription	Esophagus	oesophagus
25	chr1:62424800-62438200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:62425000-62441400	Weak transcription	Stomach Mucosa	stomach
27	chr1:62427200-62432800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:62428400-62430600	Strong transcription	Fetal Intestine Small	intestine
29	chr1:62430200-62430600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:62430600-62435400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:62430600-62442200	Weak transcription	Fetal Intestine Small	intestine
32	chr1:62431200-62431400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr1:62431600-62432200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:62432000-62433400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:62432000-62435600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr1:62432200-62439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:62432400-62433600	Enhancers	NHEK	skin
38	chr1:62432400-62434000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:62432600-62432800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr1:62432800-62433200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr1:62432800-62433400	Enhancers	HMEC	breast
42	chr1:62432800-62433600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr1:62432800-62433800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:62432800-62433800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:62433000-62434000	Enhancers	NH-A	brain
46	chr1:62433200-62433600	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr1:62433200-62433800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:62433200-62433800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr1:62433200-62433800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:62433200-62433800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links