Variant report

Variant	esv4010
Chromosome Location	chr10:38782201-38817916
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:147015520..147016167-chr10:38803805..38804327,2	MCF-7	breast:
2	chr10:38803800..38804326-chr2:89866708..89867711,3	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-14	chr10:38790522-38790674	NONHSAT012832
2	lnc-SEPT7L-5	chr10:38817492-38817571	l_293_chr10:38817176-38835580_testes
3	lnc-ZNF37A-14	chr10:38793579-38793636	NONHSAT012832
4	lnc-SEPT7L-5	chr10:38817177-38817484	l_293_chr10:38817176-38835580_testes

No data

Extended variants
information (count: 4535 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:4535 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570791841	chr10:38782201-38782202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs184640359	chr10:38782202-38782203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs541612087	chr10:38782203-38782204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs373507313	chr10:38782204-38782205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs373006558	chr10:38782205-38782206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs540798031	chr10:38782207-38782208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs376009387	chr10:38782212-38782213	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs559034367	chr10:38782219-38782220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs543442553	chr10:38782223-38782224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs563319467	chr10:38782234-38782235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs200203440	chr10:38782245-38782246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs111217838	chr10:38782254-38782255	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs144916233	chr10:38782259-38782260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs12782365	chr10:38782269-38782270	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs111208387	chr10:38782277-38782278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs528709472	chr10:38782298-38782299	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs117330041	chr10:38782302-38782303	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs568182025	chr10:38782303-38782304	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs537122263	chr10:38782324-38782325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs533759467	chr10:38782330-38782331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs76055219	chr10:38782331-38782332	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs553576849	chr10:38782334-38782335	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs111217782	chr10:38782343-38782344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs111208388	chr10:38782395-38782396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs143582531	chr10:38782402-38782403	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs570454725	chr10:38782404-38782405	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs12573753	chr10:38782409-38782410	ZNF genes & repeats Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs62641559	chr10:38782429-38782430	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs7069864	chr10:38782462-38782463	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs62642160	chr10:38782463-38782464	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs573026427	chr10:38782464-38782465	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs542021001	chr10:38782469-38782470	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs200494133	chr10:38782475-38782476	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs61837064	chr10:38782476-38782477	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs555256086	chr10:38782478-38782479	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs200151538	chr10:38782495-38782496	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs370392064	chr10:38782497-38782498	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs7085907	chr10:38782503-38782504	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs62642161	chr10:38782511-38782512	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs62642162	chr10:38782526-38782527	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs7070016	chr10:38782537-38782538	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs62638245	chr10:38782545-38782546	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs368713773	chr10:38782584-38782585	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs199730205	chr10:38782601-38782602	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs563381589	chr10:38782608-38782609	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs142899612	chr10:38782620-38782621	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs201638384	chr10:38782623-38782624	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs200213064	chr10:38782628-38782629	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs577165053	chr10:38782629-38782630	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs62640201	chr10:38782642-38782643	ZNF genes & repeats Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:291 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38783000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
2	chr10:38772400-38783200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:38772400-38783400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:38772400-38783400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
5	chr10:38772400-38783400	ZNF genes & repeats	K562	blood
6	chr10:38772400-38785200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:38772400-38786000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:38772400-38787000	ZNF genes & repeats	Fetal Heart	heart
9	chr10:38772400-38796600	ZNF genes & repeats	Colon Smooth Muscle	Colon
10	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
18	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
19	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
28	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
30	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
32	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
33	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
36	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
37	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
40	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
41	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
42	chr10:38772600-38783200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:38772600-38783200	ZNF genes & repeats	Spleen	Spleen
44	chr10:38772600-38783600	ZNF genes & repeats	Colonic Mucosa	Colon
45	chr10:38772600-38790400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:38772600-38790400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:38772600-38806600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr10:38772600-38818800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
49	chr10:38772600-38818800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
50	chr10:38772600-38818800	ZNF genes & repeats	Fetal Kidney	kidney

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