Variant report

Variant	esv4151
Chromosome Location	chr10:39079675-39125901
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845

Extended variants
information (count: 8395 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:8395 , 50 per page) page: 1 2 3 4 5 6 7 ... 168

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147581651	chr10:39079677-39079678	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs375124008	chr10:39079678-39079679	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs369679181	chr10:39079687-39079688	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs201842539	chr10:39079696-39079697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs112569991	chr10:39079714-39079715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs36166159	chr10:39079726-39079727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs112510693	chr10:39079727-39079728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs570894414	chr10:39079728-39079729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs563547533	chr10:39079739-39079740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs75297494	chr10:39079758-39079759	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs78020319	chr10:39079772-39079773	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs79931328	chr10:39079773-39079774	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs74663645	chr10:39079777-39079778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs532610888	chr10:39079782-39079783	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs36174879	chr10:39079783-39079784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs552418663	chr10:39079786-39079787	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs559483842	chr10:39079791-39079792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs528317909	chr10:39079798-39079799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs375881505	chr10:39079807-39079808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112028310	chr10:39079812-39079813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs548079127	chr10:39079815-39079816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs201068315	chr10:39079837-39079838	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs75285143	chr10:39079849-39079850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs567970102	chr10:39079853-39079854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs201025733	chr10:39079854-39079855	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs536959851	chr10:39079858-39079859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs75517984	chr10:39079863-39079864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs79592643	chr10:39079872-39079873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs76392382	chr10:39079873-39079874	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs376002580	chr10:39079880-39079881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs550131133	chr10:39079881-39079882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs369309063	chr10:39079882-39079883	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs113052006	chr10:39079884-39079885	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs75914221	chr10:39079891-39079892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs79848646	chr10:39079892-39079893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs539501752	chr10:39079895-39079896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs373002177	chr10:39079896-39079897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs552831261	chr10:39079898-39079899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs572596011	chr10:39079899-39079900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs36157156	chr10:39079902-39079903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs377417692	chr10:39079907-39079908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs76789327	chr10:39079914-39079915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs79136921	chr10:39079927-39079928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535181281	chr10:39079930-39079931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs555209928	chr10:39079932-39079933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs575150052	chr10:39079942-39079943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs80065767	chr10:39079947-39079948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs201006632	chr10:39079950-39079951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs2501537	chr10:39079957-39079958	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs76678897	chr10:39079959-39079960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:362 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39079800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
2	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr10:39076600-39079800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:39076600-39079800	ZNF genes & repeats	NH-A	brain
5	chr10:39076600-39082600	ZNF genes & repeats	K562	blood
6	chr10:39076600-39083000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:39076600-39083200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
8	chr10:39076600-39086400	ZNF genes & repeats	Spleen	Spleen
9	chr10:39076600-39088600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:39076600-39088600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:39076600-39088800	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr10:39076600-39089000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:39076600-39091000	ZNF genes & repeats	HUVEC	blood vessel
14	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
15	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
17	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
18	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
20	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
21	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
25	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
28	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
31	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
33	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
36	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
40	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
45	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
47	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
48	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
50	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain

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