Variant report

Variant	esv4247
Chromosome Location	chr10:39087354-39097358
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1698 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1698 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144306686	chr10:39087354-39087355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs550583328	chr10:39087361-39087362	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs138477982	chr10:39087370-39087371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs564288053	chr10:39087378-39087379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs10781604	chr10:39087386-39087387	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs148006771	chr10:39087399-39087400	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs546826782	chr10:39087400-39087401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs146261117	chr10:39087406-39087407	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs142306572	chr10:39087410-39087411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs142584117	chr10:39087415-39087416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs138532950	chr10:39087419-39087420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs73239296	chr10:39087424-39087425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs150567222	chr10:39087425-39087426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs549176889	chr10:39087454-39087455	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs569198985	chr10:39087455-39087456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs548794329	chr10:39087457-39087458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs538106356	chr10:39087480-39087481	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs557745844	chr10:39087498-39087499	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs10870406	chr10:39087499-39087500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs374716243	chr10:39087503-39087504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs533777871	chr10:39087509-39087510	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs201805980	chr10:39087510-39087511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs2445676	chr10:39087513-39087514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs61839003	chr10:39087514-39087515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs200950136	chr10:39087515-39087516	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs573661936	chr10:39087528-39087529	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs111798620	chr10:39087534-39087535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs200335449	chr10:39087542-39087543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs542043294	chr10:39087546-39087547	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs201122773	chr10:39087549-39087550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs75530598	chr10:39087555-39087556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs145228071	chr10:39087556-39087557	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs147495771	chr10:39087563-39087564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs201539485	chr10:39087564-39087565	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs199659348	chr10:39087565-39087566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs149853963	chr10:39087578-39087579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs142910603	chr10:39087579-39087580	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs575547789	chr10:39087581-39087582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs544461340	chr10:39087585-39087586	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs199631195	chr10:39087600-39087601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs564799999	chr10:39087603-39087604	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs200578641	chr10:39087625-39087626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs80190796	chr10:39087630-39087631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs557431358	chr10:39087631-39087632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs199848475	chr10:39087639-39087640	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs533213076	chr10:39087643-39087644	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs200651732	chr10:39087654-39087655	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs540607200	chr10:39087658-39087659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs201937558	chr10:39087659-39087660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs199998257	chr10:39087660-39087661	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:149 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39088600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:39076600-39088600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:39076600-39088800	ZNF genes & repeats	Brain Angular Gyrus	brain
5	chr10:39076600-39089000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr10:39076600-39091000	ZNF genes & repeats	HUVEC	blood vessel
7	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
8	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
10	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
11	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
12	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
13	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
14	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
18	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
20	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
21	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
26	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
28	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
30	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
33	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
34	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
40	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
42	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
44	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
45	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
46	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr10:39076800-39089000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:39076800-39095000	ZNF genes & repeats	A549	lung
49	chr10:39076800-39095000	ZNF genes & repeats	GM12878-XiMat	blood
50	chr10:39076800-39095200	ZNF genes & repeats	Brain Cingulate Gyrus	brain

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