Variant report

Variant	esv4313
Chromosome Location	chr19:53083979-53084394
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53073084..53075502-chr19:53084084..53086911,2	K562	blood:

Variant related genes	Relation type
ENSG00000167562	chromatin interactions

Extended variants
information (count: 19 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs118053560	chr19:53083987-53083988	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs62117243	chr19:53083992-53083993	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs373381370	chr19:53084076-53084077	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs578140084	chr19:53084095-53084096	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs370776009	chr19:53084129-53084130	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs201404975	chr19:53084130-53084131	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs200012264	chr19:53084131-53084132	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs373155161	chr19:53084132-53084133	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs144313530	chr19:53084134-53084135	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs145533049	chr19:53084135-53084136	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs148975963	chr19:53084174-53084175	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs113125407	chr19:53084197-53084198	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs143784118	chr19:53084202-53084203	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs151108015	chr19:53084243-53084244	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs113334250	chr19:53084303-53084304	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs141452945	chr19:53084335-53084336	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs544769	chr19:53084361-53084362	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs190085731	chr19:53084390-53084391	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs532056745	chr19:53084394-53084395	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53074200-53087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:53074400-53085800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
3	chr19:53074600-53084800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:53074600-53085800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:53074600-53087400	Weak transcription	Fetal Heart	heart
6	chr19:53074600-53088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:53074600-53103600	Weak transcription	Fetal Brain Male	brain
8	chr19:53075400-53084400	Strong transcription	Placenta	Placenta
9	chr19:53075400-53089600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:53075400-53092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:53075400-53092400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:53075400-53092400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:53075600-53085600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:53075600-53087000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr19:53075600-53087800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:53075800-53085000	Strong transcription	Fetal Stomach	stomach
17	chr19:53075800-53085600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:53075800-53085600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:53075800-53087400	Strong transcription	Osteobl	bone
20	chr19:53075800-53088000	Strong transcription	Rectal Smooth Muscle	rectum
21	chr19:53076400-53096000	Strong transcription	Dnd41	blood
22	chr19:53077600-53088000	Strong transcription	Fetal Brain Female	brain
23	chr19:53079200-53086400	Strong transcription	Ovary	ovary
24	chr19:53079200-53087400	Strong transcription	Brain Anterior Caudate	brain
25	chr19:53079200-53087800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr19:53079200-53092200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:53079400-53084400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr19:53079400-53085200	ZNF genes & repeats	Lung	lung
29	chr19:53079400-53087000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr19:53079400-53087400	Strong transcription	Brain Germinal Matrix	brain
31	chr19:53079400-53087600	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr19:53079400-53087600	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr19:53079400-53088000	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr19:53079400-53089400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:53079400-53090400	ZNF genes & repeats	Liver	Liver
36	chr19:53079400-53092200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr19:53079400-53094200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr19:53079400-53096000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr19:53079600-53089600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:53079600-53091800	ZNF genes & repeats	Thymus	Thymus
41	chr19:53079800-53089200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
42	chr19:53079800-53091000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:53080200-53085400	Weak transcription	Stomach Mucosa	stomach
44	chr19:53080200-53089400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
45	chr19:53080400-53084200	Weak transcription	NHDF-Ad	bronchial
46	chr19:53080400-53084800	Weak transcription	HMEC	breast
47	chr19:53080600-53084600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr19:53080600-53085200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr19:53080600-53085200	Weak transcription	HUVEC	blood vessel
50	chr19:53080600-53085200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links