Variant report
| Variant | esv4739 |
|---|---|
| Chromosome Location | chr20:22606122-22606741 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:22606156..22608487-chr20:22609283..22611792,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FOXA2-10 | chr20:22604710-22606895 | ucscGeneNc_uc002wso_1 |
| 2 | lnc-FOXA2-10 | chr20:22604710-22606895 | NONHSAT079002 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs143004019 | chr20:22606124-22606125 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs112388310 | chr20:22606139-22606140 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs531649845 | chr20:22606158-22606159 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs6106532 | chr20:22606162-22606163 | Weak transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs140161021 | chr20:22606179-22606180 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs550135981 | chr20:22606209-22606210 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs542467530 | chr20:22606219-22606220 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs568285075 | chr20:22606300-22606301 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs9712491 | chr20:22606326-22606327 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs559597388 | chr20:22606428-22606429 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs528418806 | chr20:22606433-22606434 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs571680649 | chr20:22606450-22606451 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs138297145 | chr20:22606487-22606488 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs564759979 | chr20:22606499-22606500 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs3920804 | chr20:22606502-22606503 | Weak transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 16 | rs146950818 | chr20:22606534-22606535 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs180691624 | chr20:22606553-22606554 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs553963608 | chr20:22606597-22606598 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs185268153 | chr20:22606622-22606623 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs138044845 | chr20:22606735-22606736 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:56)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 19627613 | CNVD |
| colon cancer | 17210682 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 16751803 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Central neurocytomas | 17123091 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Autism | 22495311 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Alagille syndrome | 17576883 | CNVD |
| Anaplastic large cell lymphoma | 18179710 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Cancer | 21183584 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Cancer | 20164919 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Thrombophilia | 17576883 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Mental retardation | 21062444 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Chordoma | 18071362 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22601600-22607200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr20:22603800-22611200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
