Variant report

Variant	esv4872
Chromosome Location	chr10:39099443-39154855
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:39150707..39151591-chr2:182675899..182676399,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845

Extended variants
information (count: 9900 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:9900 , 50 per page) page: 1 2 3 4 5 6 7 ... 198

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74379387	chr10:39099449-39099450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs538161056	chr10:39099450-39099451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs372964705	chr10:39099451-39099452	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs558803139	chr10:39099453-39099454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs10781606	chr10:39099460-39099461	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs375968285	chr10:39099463-39099464	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs200132210	chr10:39099464-39099465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs375202340	chr10:39099471-39099472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs7099305	chr10:39099472-39099473	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs7069712	chr10:39099481-39099482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs375211560	chr10:39099483-39099484	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs149296718	chr10:39099484-39099485	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs201809159	chr10:39099486-39099487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs59772357	chr10:39099497-39099498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs10781607	chr10:39099498-39099499	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs201933467	chr10:39099502-39099503	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs372925447	chr10:39099506-39099507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs76480259	chr10:39099507-39099508	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200923687	chr10:39099514-39099515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs369006179	chr10:39099522-39099523	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs372616338	chr10:39099523-39099524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs377450989	chr10:39099531-39099532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs574795616	chr10:39099539-39099540	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs543896844	chr10:39099541-39099542	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs371140961	chr10:39099555-39099556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs539493839	chr10:39099558-39099559	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs577087588	chr10:39099570-39099571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs552937404	chr10:39099577-39099578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs559650152	chr10:39099584-39099585	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs111305695	chr10:39099586-39099587	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs62637313	chr10:39099593-39099594	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs528101448	chr10:39099600-39099601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs547827166	chr10:39099602-39099603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs190592385	chr10:39099614-39099615	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs10870421	chr10:39099615-39099616	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs78068507	chr10:39099619-39099620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs77796760	chr10:39099620-39099621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs75394625	chr10:39099622-39099623	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs62637314	chr10:39099630-39099631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs541936180	chr10:39099636-39099637	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs111077173	chr10:39099640-39099641	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs550635511	chr10:39099645-39099646	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs111576852	chr10:39099646-39099647	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs80242411	chr10:39099652-39099653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs78665418	chr10:39099655-39099656	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs375594365	chr10:39099656-39099657	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs552468563	chr10:39099659-39099660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs76234046	chr10:39099660-39099661	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs75666581	chr10:39099664-39099665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs565993860	chr10:39099674-39099675	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
3	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
6	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
7	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
8	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
9	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
12	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
14	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
28	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
31	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
32	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
33	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
34	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
36	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
38	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
39	chr10:39084400-39099600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:39090200-39100000	ZNF genes & repeats	K562	blood
41	chr10:39090200-39101800	ZNF genes & repeats	Brain Angular Gyrus	brain
42	chr10:39092400-39101800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
43	chr10:39093800-39099600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
44	chr10:39093800-39101600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr10:39094000-39101800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
49	chr10:39096200-39101400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
50	chr10:39096200-39102200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links