Variant report

Variant	esv5781
Chromosome Location	chr10:39120502-39141261
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845

Extended variants
information (count: 3721 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:3721 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs61838179	chr10:39120509-39120510	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs539633576	chr10:39120510-39120511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs76299154	chr10:39120513-39120514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs553259970	chr10:39120520-39120521	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs61838180	chr10:39120526-39120527	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs573151756	chr10:39120533-39120534	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs535475880	chr10:39120539-39120540	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs10870429	chr10:39120545-39120546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs80036552	chr10:39120555-39120556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs151007691	chr10:39120556-39120557	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs376072051	chr10:39120559-39120560	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs575579102	chr10:39120562-39120563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs79381589	chr10:39120563-39120564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs544406044	chr10:39120565-39120566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs147054711	chr10:39120568-39120569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs558228885	chr10:39120569-39120570	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs570793691	chr10:39120570-39120571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs74664254	chr10:39120575-39120576	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs79433056	chr10:39120579-39120580	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs80191327	chr10:39120580-39120581	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs560471042	chr10:39120584-39120585	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs11146782	chr10:39120592-39120593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs78879871	chr10:39120593-39120594	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs370962451	chr10:39120608-39120609	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547025961	chr10:39120612-39120613	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562375280	chr10:39120613-39120614	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs531334944	chr10:39120615-39120616	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551230814	chr10:39120627-39120628	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142013508	chr10:39120630-39120631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs141549308	chr10:39120635-39120636	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139063115	chr10:39120637-39120638	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571278845	chr10:39120639-39120640	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74359591	chr10:39120642-39120643	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs77490106	chr10:39120643-39120644	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147829551	chr10:39120650-39120651	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs150193330	chr10:39120653-39120654	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77790079	chr10:39120654-39120655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs74986613	chr10:39120660-39120661	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75743207	chr10:39120662-39120663	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139447328	chr10:39120663-39120664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs2501526	chr10:39120668-39120669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs78605027	chr10:39120676-39120677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs138318841	chr10:39120681-39120682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs566838141	chr10:39120683-39120684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs77923231	chr10:39120688-39120689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75054080	chr10:39120691-39120692	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535779098	chr10:39120703-39120704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs75313467	chr10:39120704-39120705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566849649	chr10:39120712-39120713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs75435449	chr10:39120713-39120714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
5	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
21	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
25	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
26	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
27	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
30	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
31	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:39102600-39121600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
39	chr10:39103000-39121600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr10:39103400-39121600	ZNF genes & repeats	K562	blood
42	chr10:39103800-39124200	ZNF genes & repeats	HUVEC	blood vessel
43	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
44	chr10:39113800-39121600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr10:39113800-39121600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr10:39113800-39121600	ZNF genes & repeats	Colon Smooth Muscle	Colon
47	chr10:39113800-39121600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr10:39113800-39129400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:39114000-39121600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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