Variant report

Variant	esv5806
Chromosome Location	chr11:51569669-51580974
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:51570628..51572150-chr6:149317397..149318917,2	MCF-7	breast:
2	chr11:51570648..51572733-chr18:74448847..74450348,2	K562	blood:
3	chr11:51571654..51572156-chrX:61838804..61839307,2	MCF-7	breast:
4	chr1:205090687..205091190-chr11:51572148..51572834,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4A5-3	chr11:51578567-51578806	FPKM1_group_4638_transcript_1
2	lnc-OR4C46-2	chr11:51575662-51575709	NONHSAT021350
3	lnc-OR4C46-2	chr11:51571014-51571024	NONHSAT021350
4	lnc-OR4C46-2	chr11:51569667-51570142	NONHSAT021350
5	lnc-OR4A5-3	chr11:51578567-51578806	NONHSAT021351
6	lnc-OR4C46-2	chr11:51573408-51573440	NONHSAT021350

No data

Variant related genes	Relation type
ENSG00000117222	chromatin interactions

Extended variants
information (count: 2627 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:2627 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369279357	chr11:51569669-51569670	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
2	rs79898661	chr11:51569672-51569673	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
3	rs558364262	chr11:51569673-51569674	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
4	rs61892724	chr11:51569675-51569676	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
5	rs200933543	chr11:51569680-51569681	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
6	rs111716132	chr11:51569683-51569684	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
7	rs573605286	chr11:51569687-51569688	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
8	rs185878394	chr11:51569694-51569695	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
9	rs80293701	chr11:51569696-51569697	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
10	rs540947184	chr11:51569709-51569710	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
11	rs556061315	chr11:51569716-51569717	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201332529	chr11:51569719-51569720	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
13	rs370158804	chr11:51569721-51569722	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
14	rs61892725	chr11:51569729-51569730	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
15	rs541413632	chr11:51569731-51569732	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
16	rs375652947	chr11:51569732-51569733	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
17	rs563439148	chr11:51569734-51569735	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
18	rs61892726	chr11:51569739-51569740	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
19	rs61892727	chr11:51569743-51569744	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
20	rs530506048	chr11:51569745-51569746	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
21	rs61892728	chr11:51569753-51569754	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
22	rs545623218	chr11:51569757-51569758	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
23	rs61892729	chr11:51569758-51569759	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
24	rs77101045	chr11:51569762-51569763	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
25	rs563963346	chr11:51569765-51569766	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
26	rs79908501	chr11:51569767-51569768	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
27	rs113142588	chr11:51569769-51569770	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
28	rs140673174	chr11:51569773-51569774	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
29	rs112762795	chr11:51569776-51569777	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
30	rs528239509	chr11:51569777-51569778	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
31	rs79952655	chr11:51569788-51569789	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
32	rs546500770	chr11:51569792-51569793	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
33	rs77490432	chr11:51569794-51569795	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
34	rs568220331	chr11:51569797-51569798	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
35	rs7930539	chr11:51569804-51569805	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
36	rs61892730	chr11:51569806-51569807	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
37	rs373333854	chr11:51569809-51569810	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
38	rs77368597	chr11:51569817-51569818	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
39	rs79656130	chr11:51569818-51569819	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
40	rs569365356	chr11:51569819-51569820	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
41	rs61892731	chr11:51569820-51569821	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
42	rs539917424	chr11:51569822-51569823	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
43	rs200000165	chr11:51569826-51569827	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
44	rs76898234	chr11:51569827-51569828	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
45	rs181047761	chr11:51569829-51569830	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
46	rs76669293	chr11:51569831-51569832	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
47	rs185078447	chr11:51569832-51569833	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
48	rs375101687	chr11:51569834-51569835	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
49	rs76959891	chr11:51569841-51569842	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
50	rs76033752	chr11:51569842-51569843	ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:525 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51570000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:51567200-51570200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:51567200-51570200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:51567200-51570200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:51567200-51570200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr11:51567200-51570200	ZNF genes & repeats	Brain Angular Gyrus	brain
7	chr11:51567200-51570200	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr11:51567200-51570200	ZNF genes & repeats	Left Ventricle	heart
9	chr11:51567200-51570200	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr11:51567200-51570200	ZNF genes & repeats	Small Intestine	intestine
11	chr11:51567200-51570200	ZNF genes & repeats	HepG2	liver
12	chr11:51567200-51570400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr11:51567200-51570400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:51567200-51570400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:51567200-51570400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr11:51567200-51570400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr11:51567200-51570400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:51567200-51570400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
19	chr11:51567200-51570400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
20	chr11:51567200-51570400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr11:51567200-51570600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr11:51567200-51573600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr11:51567200-51573600	ZNF genes & repeats	Liver	Liver
24	chr11:51567200-51573800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr11:51567200-51575800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:51567200-51576400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:51567200-51576600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr11:51567200-51581200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr11:51567200-51581200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:51567200-51581200	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr11:51567200-51581400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:51567200-51583200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr11:51567200-51584000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:51567200-51584000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr11:51567200-51584200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr11:51567200-51584400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr11:51568200-51570200	ZNF genes & repeats	NH-A	brain
40	chr11:51568400-51570200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:51568400-51570200	ZNF genes & repeats	Hela-S3	cervix
42	chr11:51568400-51570400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr11:51568400-51570400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
44	chr11:51569000-51570200	ZNF genes & repeats	Gastric	stomach
45	chr11:51569000-51573600	ZNF genes & repeats	Fetal Stomach	stomach
46	chr11:51569200-51570200	ZNF genes & repeats	Fetal Heart	heart
47	chr11:51569400-51570200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
48	chr11:51569400-51570400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr11:51569400-51570400	ZNF genes & repeats	Dnd41	blood
50	chr11:51569400-51570400	ZNF genes & repeats	HUVEC	blood vessel

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