Variant report

Variant	esv6053
Chromosome Location	chr10:42387335-42394781
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
2	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
3	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
4	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
2	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
3	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000198931	chromatin interactions

Extended variants
information (count: 2354 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2354 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148840981	chr10:42387335-42387336	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs4569601	chr10:42387337-42387338	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs4464411	chr10:42387338-42387339	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs141347222	chr10:42387339-42387340	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs4467414	chr10:42387340-42387341	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs4365589	chr10:42387341-42387342	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs36148151	chr10:42387342-42387343	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs150395566	chr10:42387344-42387345	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs138228308	chr10:42387345-42387346	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs74443261	chr10:42387346-42387347	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs147266760	chr10:42387347-42387348	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
12	rs138159582	chr10:42387348-42387349	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs143622117	chr10:42387349-42387350	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs147221897	chr10:42387350-42387351	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs140564279	chr10:42387351-42387352	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs142068483	chr10:42387352-42387353	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs150727262	chr10:42387353-42387354	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs77801909	chr10:42387357-42387358	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs35261729	chr10:42387358-42387359	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs4464408	chr10:42387361-42387362	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs4569620	chr10:42387363-42387364	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs9665546	chr10:42387364-42387365	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs532817250	chr10:42387367-42387368	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs35042096	chr10:42387368-42387369	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs552574137	chr10:42387371-42387372	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs4261840	chr10:42387373-42387374	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs9663350	chr10:42387374-42387375	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs4274712	chr10:42387375-42387376	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs71223292	chr10:42387382-42387383	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs74197597	chr10:42387384-42387385	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs141534972	chr10:42387385-42387386	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs71241715	chr10:42387386-42387387	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs143751255	chr10:42387387-42387388	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs146884301	chr10:42387391-42387392	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs9794034	chr10:42387392-42387393	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs75891105	chr10:42387393-42387394	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs71225791	chr10:42387394-42387395	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs74188418	chr10:42387395-42387396	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs34307133	chr10:42387396-42387397	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs146645435	chr10:42387397-42387398	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs71263631	chr10:42387398-42387399	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs139102125	chr10:42387399-42387400	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs143634457	chr10:42387400-42387401	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs147185918	chr10:42387402-42387403	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs4096173	chr10:42387405-42387406	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs149330974	chr10:42387406-42387407	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs74186163	chr10:42387407-42387408	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs79818701	chr10:42387412-42387413	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs478528	chr10:42387417-42387418	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs77614770	chr10:42387418-42387419	ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42387800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
2	chr10:42373600-42388200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr10:42373600-42388200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr10:42373600-42388200	ZNF genes & repeats	Placenta	Placenta
5	chr10:42373600-42388200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
6	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
7	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
8	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
9	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
10	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
11	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
12	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
13	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
15	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
22	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
30	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
32	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
33	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
35	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
37	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
38	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
39	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
41	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
42	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
43	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
44	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
45	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
46	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
47	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
49	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
50	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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