Variant report

Variant	esv6086
Chromosome Location	chr11:105765279-105766052
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114076688	chr11:105765305-105765306	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565769254	chr11:105765311-105765312	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs671071	chr11:105765314-105765315	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs536464128	chr11:105765328-105765329	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554774460	chr11:105765361-105765362	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576407201	chr11:105765376-105765377	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543699765	chr11:105765379-105765380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558721366	chr11:105765393-105765394	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577166588	chr11:105765404-105765405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1271104	chr11:105765446-105765447	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs545501377	chr11:105765467-105765468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559813820	chr11:105765472-105765473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569292239	chr11:105765518-105765519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530106966	chr11:105765587-105765588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs559467440	chr11:105765619-105765620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs542022947	chr11:105765626-105765627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563501343	chr11:105765657-105765658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531152246	chr11:105765765-105765766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527811337	chr11:105765817-105765818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546274074	chr11:105765830-105765831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs1940965	chr11:105765861-105765862	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs146366987	chr11:105765916-105765917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs375389643	chr11:105765931-105765932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs547041404	chr11:105765963-105765964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs141480761	chr11:105765978-105765979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs71759485	chr11:105765979-105765980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs202204376	chr11:105765981-105765982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs34019981	chr11:105765986-105765987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs193088328	chr11:105765995-105765996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs59472131	chr11:105766006-105766007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs61902576	chr11:105766007-105766008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105762600-105767400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105765200-105765400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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