Variant report

Variant	esv6228
Chromosome Location	chr11:51575670-51580710
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4A5-3	chr11:51578567-51578806	FPKM1_group_4638_transcript_1
2	lnc-OR4C46-2	chr11:51575662-51575709	NONHSAT021350
3	lnc-OR4A5-3	chr11:51578567-51578806	NONHSAT021351

Extended variants
information (count: 1153 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:1153 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74627805	chr11:51575680-51575681	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs529266542	chr11:51575681-51575682	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs75734483	chr11:51575682-51575683	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs35801708	chr11:51575687-51575688	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs562969880	chr11:51575689-51575690	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs78345770	chr11:51575693-51575694	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs376373381	chr11:51575696-51575697	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs369945962	chr11:51575698-51575699	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs373796269	chr11:51575701-51575702	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs376189486	chr11:51575705-51575706	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs533404053	chr11:51575706-51575707	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs35604804	chr11:51575715-51575716	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs61890655	chr11:51575722-51575723	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs563039704	chr11:51575725-51575726	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs368581044	chr11:51575728-51575729	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs34846001	chr11:51575730-51575731	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs139344651	chr11:51575734-51575735	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs149112392	chr11:51575738-51575739	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528010844	chr11:51575739-51575740	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs201151404	chr11:51575744-51575745	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs138439286	chr11:51575753-51575754	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs549232429	chr11:51575758-51575759	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs111723641	chr11:51575766-51575767	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs144822169	chr11:51575770-51575771	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs567719665	chr11:51575778-51575779	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs144017224	chr11:51575782-51575783	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs535077935	chr11:51575789-51575790	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs11530975	chr11:51575790-51575791	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs149661697	chr11:51575791-51575792	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs539281214	chr11:51575792-51575793	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs202009038	chr11:51575794-51575795	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs61890656	chr11:51575795-51575796	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs199701686	chr11:51575815-51575816	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11246665	chr11:51575820-51575821	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs148631840	chr11:51575822-51575823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs139779500	chr11:51575831-51575832	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs61890657	chr11:51575840-51575841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs574131846	chr11:51575841-51575842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544610137	chr11:51575842-51575843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111852876	chr11:51575847-51575848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs61890658	chr11:51575848-51575849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs61890659	chr11:51575850-51575851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372111410	chr11:51575851-51575852	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113124509	chr11:51575852-51575853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs375165779	chr11:51575856-51575857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs367944902	chr11:51575859-51575860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs371755311	chr11:51575866-51575867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs61890961	chr11:51575868-51575869	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145777018	chr11:51575869-51575870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376564700	chr11:51575870-51575871	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:236 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51575800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:51567200-51576400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:51567200-51576600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr11:51567200-51581200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr11:51567200-51581200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:51567200-51581200	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr11:51567200-51581400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:51567200-51583200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr11:51567200-51584000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:51567200-51584000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr11:51567200-51584200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr11:51567200-51584400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr11:51571800-51575800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr11:51571800-51581200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr11:51572000-51575800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
18	chr11:51572000-51581200	ZNF genes & repeats	Left Ventricle	heart
19	chr11:51574400-51581200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr11:51574600-51581200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr11:51574800-51575800	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr11:51575200-51575800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:51575200-51575800	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr11:51575200-51576000	ZNF genes & repeats	HMEC	breast
25	chr11:51575200-51576200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
26	chr11:51575200-51581200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
27	chr11:51575200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:51575200-51581200	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr11:51575400-51575800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr11:51575400-51575800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr11:51575400-51575800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:51575400-51575800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr11:51575400-51575800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
34	chr11:51575400-51575800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
35	chr11:51575400-51575800	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr11:51575400-51576000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr11:51575400-51576000	ZNF genes & repeats	Fetal Stomach	stomach
38	chr11:51575400-51577200	ZNF genes & repeats	HepG2	liver
39	chr11:51575400-51581200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:51575400-51581200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:51575400-51581200	ZNF genes & repeats	Colon Smooth Muscle	Colon
42	chr11:51575600-51575800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:51575600-51575800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:51575600-51575800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:51575600-51575800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:51575600-51575800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
47	chr11:51575600-51575800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:51575600-51575800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:51575600-51575800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:51575600-51575800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood

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