Variant report

Variant	esv6260
Chromosome Location	chr10:39113876-39153964
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:39150707..39151591-chr2:182675899..182676399,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845

Extended variants
information (count: 7026 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:7026 , 50 per page) page: 1 2 3 4 5 6 7 ... 141

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544013279	chr10:39113885-39113886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs564203368	chr10:39113889-39113890	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs532779357	chr10:39113895-39113896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs552787212	chr10:39113899-39113900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs61837599	chr10:39113909-39113910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs566391141	chr10:39113914-39113915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs61837600	chr10:39113919-39113920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs75377372	chr10:39113926-39113927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs528767337	chr10:39113942-39113943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs79424999	chr10:39113949-39113950	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs199878392	chr10:39113950-39113951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs548565664	chr10:39113953-39113954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs568323797	chr10:39113954-39113955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs537443375	chr10:39113955-39113956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs75597502	chr10:39113964-39113965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs79635016	chr10:39113969-39113970	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs78946824	chr10:39113982-39113983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs76641305	chr10:39113984-39113985	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200852349	chr10:39113994-39113995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs570903467	chr10:39113995-39113996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs79862802	chr10:39114002-39114003	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs538318228	chr10:39114004-39114005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs143041600	chr10:39114007-39114008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs140146742	chr10:39114008-39114009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs552716707	chr10:39114009-39114010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs572826365	chr10:39114010-39114011	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs541677841	chr10:39114015-39114016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs201769832	chr10:39114020-39114021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs112110423	chr10:39114022-39114023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs145463398	chr10:39114028-39114029	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs575175066	chr10:39114033-39114034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs113916900	chr10:39114035-39114036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs76451716	chr10:39114036-39114037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs145957393	chr10:39114042-39114043	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs564058618	chr10:39114043-39114044	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs149558177	chr10:39114044-39114045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs140062111	chr10:39114048-39114049	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs11146777	chr10:39114049-39114050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs140368424	chr10:39114050-39114051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs147654400	chr10:39114051-39114052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs112526760	chr10:39114053-39114054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs80246813	chr10:39114055-39114056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs546439976	chr10:39114059-39114060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs201041660	chr10:39114078-39114079	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs79565231	chr10:39114079-39114080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs202155412	chr10:39114083-39114084	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs77296095	chr10:39114085-39114086	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs559940286	chr10:39114087-39114088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs528804376	chr10:39114091-39114092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs548641472	chr10:39114093-39114094	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:385 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
3	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
6	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
8	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
22	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
26	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
27	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
28	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
31	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
32	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
33	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
35	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:39101200-39117600	ZNF genes & repeats	HepG2	liver
37	chr10:39102600-39121600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
41	chr10:39103000-39121600	ZNF genes & repeats	GM12878-XiMat	blood
42	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
43	chr10:39103400-39121600	ZNF genes & repeats	K562	blood
44	chr10:39103800-39124200	ZNF genes & repeats	HUVEC	blood vessel
45	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr10:39106800-39115600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:39110600-39115000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:39110800-39114600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr10:39113800-39114600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr10:39113800-39116200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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