Variant report

Variant	esv6349
Chromosome Location	chr10:42390106-42396961
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
2	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
3	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

Extended variants
information (count: 2170 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2170 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs56546058	chr10:42390109-42390110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs79868217	chr10:42390110-42390111	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74978699	chr10:42390115-42390116	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75399239	chr10:42390116-42390117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74193483	chr10:42390117-42390118	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77909920	chr10:42390124-42390125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570103832	chr10:42390126-42390127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71238870	chr10:42390128-42390129	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71206199	chr10:42390129-42390130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs538468705	chr10:42390136-42390137	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs551941050	chr10:42390140-42390141	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565668427	chr10:42390141-42390142	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75109352	chr10:42390143-42390144	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs71241975	chr10:42390145-42390146	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs534602972	chr10:42390148-42390149	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74185644	chr10:42390149-42390150	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs71207788	chr10:42390150-42390151	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs74193371	chr10:42390152-42390153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs79851973	chr10:42390156-42390157	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs11266131	chr10:42390157-42390158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537006383	chr10:42390159-42390160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556802333	chr10:42390160-42390161	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs35996885	chr10:42390161-42390162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545646064	chr10:42390163-42390164	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565474570	chr10:42390167-42390168	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78056670	chr10:42390168-42390169	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201711678	chr10:42390181-42390182	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374849127	chr10:42390185-42390186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572815709	chr10:42390189-42390190	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs74196885	chr10:42390191-42390192	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs74218553	chr10:42390192-42390193	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369477548	chr10:42390194-42390195	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200010214	chr10:42390198-42390199	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201695726	chr10:42390199-42390200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61848505	chr10:42390205-42390206	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541753835	chr10:42390206-42390207	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs36192082	chr10:42390207-42390208	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397833035	chr10:42390208-42390209	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs61848506	chr10:42390209-42390210	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74200057	chr10:42390211-42390212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs34991679	chr10:42390213-42390214	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs563667919	chr10:42390215-42390216	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs4630907	chr10:42390222-42390223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371035604	chr10:42390224-42390225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532618953	chr10:42390229-42390230	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145966013	chr10:42390233-42390234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs4435599	chr10:42390234-42390235	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs4271883	chr10:42390239-42390240	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4479557	chr10:42390241-42390242	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61848508	chr10:42390244-42390245	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:167 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
2	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
7	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
29	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
30	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
31	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
36	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
37	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
38	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
39	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
47	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
49	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver

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