Variant report

Variant	esv6578
Chromosome Location	chr10:42398594-42409299
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
2	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
3	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
4	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:
5	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
6	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
7	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42398302-42398937	NONHSAT012847
2	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
3	lnc-BMS1-12	chr10:42399130-42399193	NONHSAT012847
4	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
5	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850
6	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850
7	lnc-BMS1-12	chr10:42399434-42399525	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions

Extended variants
information (count: 2700 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:2700 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200447624	chr10:42398601-42398602	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs201540814	chr10:42398607-42398608	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs111649950	chr10:42398616-42398617	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs563290337	chr10:42398635-42398636	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs74192624	chr10:42398641-42398642	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs200557239	chr10:42398642-42398643	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs576878936	chr10:42398646-42398647	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs200708345	chr10:42398647-42398648	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs9794364	chr10:42398648-42398649	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs545940226	chr10:42398649-42398650	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs559381341	chr10:42398670-42398671	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
12	rs74197029	chr10:42398672-42398673	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs201700157	chr10:42398677-42398678	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs199917361	chr10:42398681-42398682	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs373564869	chr10:42398683-42398684	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs61847614	chr10:42398684-42398685	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs527917596	chr10:42398685-42398686	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs75807714	chr10:42398686-42398687	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs547966748	chr10:42398687-42398688	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs78182501	chr10:42398692-42398693	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs74650938	chr10:42398693-42398694	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs74202903	chr10:42398697-42398698	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs200865335	chr10:42398698-42398699	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs374247797	chr10:42398703-42398704	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs199966622	chr10:42398712-42398713	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs67905440	chr10:42398729-42398730	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs201066656	chr10:42398736-42398737	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs202029174	chr10:42398739-42398740	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs79435345	chr10:42398744-42398745	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs201139508	chr10:42398750-42398751	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs201944508	chr10:42398753-42398754	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs74200188	chr10:42398768-42398769	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs372683145	chr10:42398772-42398773	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs71239999	chr10:42398775-42398776	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs74204829	chr10:42398779-42398780	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs78326845	chr10:42398780-42398781	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs1900953	chr10:42398790-42398791	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs375586172	chr10:42398791-42398792	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs71275242	chr10:42398794-42398795	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs74186247	chr10:42398795-42398796	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs61847615	chr10:42398796-42398797	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs530430430	chr10:42398798-42398799	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs199661188	chr10:42398802-42398803	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs12262123	chr10:42398803-42398804	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs569744551	chr10:42398805-42398806	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs369395981	chr10:42398808-42398809	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs200284528	chr10:42398811-42398812	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs201272822	chr10:42398818-42398819	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs71226422	chr10:42398819-42398820	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs71219940	chr10:42398820-42398821	ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:487 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
3	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
10	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
23	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
25	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
26	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
28	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
29	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
31	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
32	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
33	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
34	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
35	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
37	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
38	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
39	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
41	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
42	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
43	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
45	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver
47	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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