Variant report

Variant	esv6663
Chromosome Location	chr11:51574660-51579497
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4A5-3	chr11:51578567-51578806	FPKM1_group_4638_transcript_1
2	lnc-OR4C46-2	chr11:51575662-51575709	NONHSAT021350
3	lnc-OR4A5-3	chr11:51578567-51578806	NONHSAT021351

Extended variants
information (count: 1001 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:1001 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368708884	chr11:51574661-51574662	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs113134913	chr11:51574662-51574663	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113730484	chr11:51574673-51574674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113587672	chr11:51574680-51574681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs372131646	chr11:51574684-51574685	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs199571922	chr11:51574685-51574686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200503703	chr11:51574694-51574695	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373069361	chr11:51574700-51574701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375372288	chr11:51574704-51574705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369399912	chr11:51574706-51574707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374216149	chr11:51574708-51574709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377622662	chr11:51574713-51574714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs547029528	chr11:51574719-51574720	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141656541	chr11:51574723-51574724	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371305654	chr11:51574724-51574725	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs374316378	chr11:51574726-51574727	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536051789	chr11:51574727-51574728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376987130	chr11:51574728-51574729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs190905711	chr11:51574734-51574735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370344936	chr11:51574736-51574737	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374283915	chr11:51574737-51574738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368150523	chr11:51574739-51574740	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370367289	chr11:51574740-51574741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374331051	chr11:51574743-51574744	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376348343	chr11:51574745-51574746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368227908	chr11:51574762-51574763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368716069	chr11:51574764-51574765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182733631	chr11:51574767-51574768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs575989653	chr11:51574768-51574769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76614238	chr11:51574782-51574783	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs78398483	chr11:51574783-51574784	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576144825	chr11:51574791-51574792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs36158724	chr11:51574802-51574803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs75475506	chr11:51574804-51574805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76122436	chr11:51574808-51574809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77423766	chr11:51574810-51574811	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs78366019	chr11:51574812-51574813	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77137997	chr11:51574817-51574818	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs80298596	chr11:51574819-51574820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79938505	chr11:51574822-51574823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558287895	chr11:51574824-51574825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77455627	chr11:51574827-51574828	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75032860	chr11:51574829-51574830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs80122252	chr11:51574832-51574833	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs373317596	chr11:51574834-51574835	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs540782329	chr11:51574835-51574836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201477634	chr11:51574836-51574837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs77231198	chr11:51574838-51574839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs574340710	chr11:51574840-51574841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78198324	chr11:51574845-51574846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:235 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51575800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:51567200-51576400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:51567200-51576600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr11:51567200-51581200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr11:51567200-51581200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:51567200-51581200	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr11:51567200-51581400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:51567200-51583200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr11:51567200-51584000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:51567200-51584000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr11:51567200-51584200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr11:51567200-51584400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr11:51571800-51575800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr11:51571800-51581200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr11:51572000-51575800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
18	chr11:51572000-51581200	ZNF genes & repeats	Left Ventricle	heart
19	chr11:51573600-51575400	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:51573600-51575600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:51573600-51575600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:51573600-51575600	Weak transcription	Esophagus	oesophagus
23	chr11:51573600-51575600	Weak transcription	Fetal Heart	heart
24	chr11:51573600-51575600	Weak transcription	Fetal Thymus	thymus
25	chr11:51573600-51575600	Weak transcription	Lung	lung
26	chr11:51573600-51575600	Weak transcription	Ovary	ovary
27	chr11:51573600-51575600	Weak transcription	Pancreas	Pancrea
28	chr11:51573600-51575600	Weak transcription	Right Atrium	heart
29	chr11:51573600-51575600	Weak transcription	Right Ventricle	heart
30	chr11:51573600-51575600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:51573600-51575600	Weak transcription	Stomach Mucosa	stomach
32	chr11:51573600-51575600	Weak transcription	Thymus	Thymus
33	chr11:51573600-51575600	Weak transcription	Spleen	Spleen
34	chr11:51573600-51575600	Weak transcription	GM12878-XiMat	blood
35	chr11:51573600-51575600	Weak transcription	Hela-S3	cervix
36	chr11:51573600-51575600	Weak transcription	HSMM	muscle
37	chr11:51573600-51575600	Weak transcription	HUVEC	blood vessel
38	chr11:51573600-51575600	Weak transcription	K562	blood
39	chr11:51573600-51575600	Weak transcription	NH-A	brain
40	chr11:51573600-51575600	Weak transcription	NHDF-Ad	bronchial
41	chr11:51573600-51575600	Weak transcription	NHEK	skin
42	chr11:51573600-51575600	Weak transcription	Osteobl	bone
43	chr11:51574400-51581200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr11:51574600-51575000	ZNF genes & repeats	HepG2	liver
45	chr11:51574600-51581200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
46	chr11:51574800-51575800	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr11:51575200-51575800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:51575200-51575800	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr11:51575200-51576000	ZNF genes & repeats	HMEC	breast
50	chr11:51575200-51576200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links