Variant report

Variant	esv7222
Chromosome Location	chr10:42662287-42667380
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 797 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:797 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373874806	chr10:42662289-42662290	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs367761515	chr10:42662290-42662291	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371248271	chr10:42662295-42662296	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs62649159	chr10:42662299-42662300	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528681894	chr10:42662300-42662301	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368769901	chr10:42662316-42662317	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372167362	chr10:42662317-42662318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568548883	chr10:42662323-42662324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs369347659	chr10:42662326-42662327	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs537192318	chr10:42662329-42662330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs375244893	chr10:42662331-42662332	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369496240	chr10:42662337-42662338	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372187262	chr10:42662341-42662342	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs375117826	chr10:42662347-42662348	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570543422	chr10:42662351-42662352	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539421906	chr10:42662352-42662353	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552853002	chr10:42662353-42662354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372950690	chr10:42662354-42662355	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62650160	chr10:42662362-42662363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62650161	chr10:42662365-42662366	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs62650162	chr10:42662368-42662369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148958679	chr10:42662376-42662377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs138131202	chr10:42662377-42662378	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs62650163	chr10:42662386-42662387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573054857	chr10:42662390-42662391	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs144890127	chr10:42662396-42662397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141272266	chr10:42662401-42662402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62650164	chr10:42662405-42662406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs143457916	chr10:42662408-42662409	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs147302657	chr10:42662411-42662412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs367848694	chr10:42662412-42662413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541750628	chr10:42662414-42662415	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555583393	chr10:42662416-42662417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369181806	chr10:42662421-42662422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs575324067	chr10:42662426-42662427	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544359413	chr10:42662438-42662439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs142803084	chr10:42662445-42662446	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141058896	chr10:42662448-42662449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs137868152	chr10:42662451-42662452	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs202188465	chr10:42662461-42662462	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs564137569	chr10:42662465-42662466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532978540	chr10:42662466-42662467	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540186893	chr10:42662469-42662470	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111209069	chr10:42662486-42662487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs189695477	chr10:42662490-42662491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs199807103	chr10:42662496-42662497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528821862	chr10:42662497-42662498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143584795	chr10:42662507-42662508	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs548595671	chr10:42662515-42662516	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568663661	chr10:42662517-42662518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42661200-42662600	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr10:42661200-42663000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:42661200-42663200	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr10:42661200-42663200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
11	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
14	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
15	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
21	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
26	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
27	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
28	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
29	chr10:42661400-42667200	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr10:42661400-42667200	ZNF genes & repeats	GM12878-XiMat	blood
31	chr10:42661400-42667400	ZNF genes & repeats	HepG2	liver
32	chr10:42661400-42667600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
33	chr10:42661400-42667600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr10:42661400-42667600	ZNF genes & repeats	Fetal Kidney	kidney
35	chr10:42661400-42667600	ZNF genes & repeats	HUVEC	blood vessel
36	chr10:42661400-42667800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
37	chr10:42661600-42666800	Weak transcription	NHDF-Ad	bronchial
38	chr10:42661800-42662800	Weak transcription	NHEK	skin
39	chr10:42662800-42663000	ZNF genes & repeats	NHEK	skin
40	chr10:42663600-42664200	ZNF genes & repeats	NH-A	brain
41	chr10:42666000-42667600	ZNF genes & repeats	Gastric	stomach
42	chr10:42666800-42667400	ZNF genes & repeats	NH-A	brain
43	chr10:42666800-42667600	ZNF genes & repeats	NHDF-Ad	bronchial
44	chr10:42667200-42667600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
45	chr10:42667200-42667600	ZNF genes & repeats	Brain Hippocampus Middle	brain

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