Variant report

Variant	esv7236
Chromosome Location	chr10:42403110-42408322
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
2	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850
3	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850

Extended variants
information (count: 1069 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:1069 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141762814	chr10:42403111-42403112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77018397	chr10:42403113-42403114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs78852223	chr10:42403148-42403149	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs80054375	chr10:42403154-42403155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs78226723	chr10:42403156-42403157	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556871144	chr10:42403159-42403160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199669408	chr10:42403161-42403162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539488053	chr10:42403164-42403165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs74803576	chr10:42403173-42403174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369820773	chr10:42403176-42403177	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs189951927	chr10:42403185-42403186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558750195	chr10:42403193-42403194	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201631563	chr10:42403198-42403199	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183016036	chr10:42403203-42403204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs75165608	chr10:42403205-42403206	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572284337	chr10:42403211-42403212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200032376	chr10:42403216-42403217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111824097	chr10:42403229-42403230	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75406143	chr10:42403233-42403234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs75282762	chr10:42403234-42403235	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561237814	chr10:42403257-42403258	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574823684	chr10:42403264-42403265	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190718723	chr10:42403265-42403266	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs76145947	chr10:42403266-42403267	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs78773492	chr10:42403267-42403268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78608082	chr10:42403268-42403269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76884501	chr10:42403270-42403271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74483765	chr10:42403273-42403274	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs373313295	chr10:42403274-42403275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563665121	chr10:42403280-42403281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368303262	chr10:42403281-42403282	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369047849	chr10:42403283-42403284	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188821932	chr10:42403286-42403287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs78784722	chr10:42403300-42403301	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs528284370	chr10:42403301-42403302	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548546925	chr10:42403302-42403303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs140435812	chr10:42403305-42403306	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375618416	chr10:42403307-42403308	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142388929	chr10:42403312-42403313	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141365025	chr10:42403313-42403314	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs145980950	chr10:42403318-42403319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192482990	chr10:42403324-42403325	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200707634	chr10:42403358-42403359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188758892	chr10:42403381-42403382	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs540490196	chr10:42403382-42403383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550322669	chr10:42403391-42403392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570401633	chr10:42403398-42403399	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201903508	chr10:42403400-42403401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148231332	chr10:42403421-42403422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs140295267	chr10:42403434-42403435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:209 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr10:42373600-42409600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr10:42373600-42409800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42373600-42410000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr10:42373600-42412000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr10:42373600-42413800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr10:42373600-42416800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr10:42373600-42420800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr10:42373600-42421000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:42373800-42408000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
14	chr10:42373800-42408800	ZNF genes & repeats	Primary B cells from cord blood	blood
15	chr10:42386600-42403400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:42400800-42408200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:42401600-42403400	ZNF genes & repeats	Left Ventricle	heart
18	chr10:42401600-42405400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr10:42401600-42408400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:42402200-42404200	Weak transcription	Hela-S3	cervix
21	chr10:42402200-42404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:42402200-42404400	Weak transcription	GM12878-XiMat	blood
23	chr10:42402200-42404400	Weak transcription	NHLF	lung
24	chr10:42402200-42404800	Weak transcription	Right Ventricle	heart
25	chr10:42402400-42403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:42402600-42404200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:42402600-42404200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:42402600-42404200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:42402600-42404200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:42402600-42404200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:42402600-42404200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:42402600-42404200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:42402600-42404200	Weak transcription	Aorta	Aorta
34	chr10:42402600-42404200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:42402600-42404200	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:42402600-42404200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:42402600-42404200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:42402600-42404200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:42402600-42404200	Weak transcription	Psoas Muscle	Psoas
40	chr10:42402600-42404200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:42402600-42404200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:42402600-42404200	Weak transcription	Small Intestine	intestine
43	chr10:42402600-42404200	Weak transcription	HUVEC	blood vessel
44	chr10:42402600-42404200	Weak transcription	NH-A	brain
45	chr10:42402600-42404400	Weak transcription	Fetal Heart	heart
46	chr10:42402600-42404400	Weak transcription	K562	blood
47	chr10:42402600-42404800	Weak transcription	Ovary	ovary
48	chr10:42402600-42404800	Weak transcription	Osteobl	bone
49	chr10:42402800-42404200	Weak transcription	Adipose Nuclei	Adipose
50	chr10:42403000-42403400	ZNF genes & repeats	HSMMtube	muscle

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