Variant report

Variant	esv7529
Chromosome Location	chr10:42597784-42600222
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-9	chr10:42598751-42598801	NONHSAT012853

Extended variants
information (count: 828 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:828 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4472889	chr10:42597784-42597785	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147064637	chr10:42597785-42597786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74186453	chr10:42597789-42597790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75402813	chr10:42597791-42597792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs148888873	chr10:42597796-42597797	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143545292	chr10:42597797-42597798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34970706	chr10:42597798-42597799	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148068140	chr10:42597805-42597806	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs58907762	chr10:42597806-42597807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs150579995	chr10:42597807-42597808	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs138532525	chr10:42597808-42597809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141484616	chr10:42597810-42597811	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs146228055	chr10:42597816-42597817	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139192774	chr10:42597818-42597819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571974779	chr10:42597819-42597820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs35606951	chr10:42597820-42597821	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs144325527	chr10:42597823-42597824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs74206754	chr10:42597824-42597825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148762308	chr10:42597829-42597830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs28786531	chr10:42597830-42597831	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554083918	chr10:42597833-42597834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs4472890	chr10:42597834-42597835	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs147945933	chr10:42597835-42597836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574001909	chr10:42597843-42597844	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs4488156	chr10:42597849-42597850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145347964	chr10:42597862-42597863	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs147703773	chr10:42597865-42597866	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs140979324	chr10:42597866-42597867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150212125	chr10:42597871-42597872	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138043192	chr10:42597874-42597875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558261904	chr10:42597876-42597877	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79782633	chr10:42597883-42597884	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs61664534	chr10:42597884-42597885	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs78680558	chr10:42597886-42597887	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs74201606	chr10:42597887-42597888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs76237471	chr10:42597889-42597890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562762322	chr10:42597891-42597892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76076503	chr10:42597893-42597894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs59001849	chr10:42597895-42597896	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs57175335	chr10:42597896-42597897	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79257262	chr10:42597897-42597898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77213786	chr10:42597902-42597903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs76948496	chr10:42597903-42597904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371240393	chr10:42597907-42597908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs77693248	chr10:42597909-42597910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9794057	chr10:42597912-42597913	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142998876	chr10:42597914-42597915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs74610460	chr10:42597918-42597919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77619478	chr10:42597919-42597920	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs146178516	chr10:42597923-42597924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:148 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42596600-42597800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:42596600-42598000	ZNF genes & repeats	Fetal Intestine Large	intestine
3	chr10:42596600-42598600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:42596600-42598600	ZNF genes & repeats	Psoas Muscle	Psoas
5	chr10:42596600-42600200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42596600-42600200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:42596600-42600200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:42596600-42600200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:42596600-42600200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr10:42596600-42600200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
13	chr10:42596600-42600200	ZNF genes & repeats	Aorta	Aorta
14	chr10:42596600-42600200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
15	chr10:42596600-42600200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:42596600-42600200	ZNF genes & repeats	Colonic Mucosa	Colon
17	chr10:42596600-42600200	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr10:42596600-42600200	ZNF genes & repeats	Placenta	Placenta
19	chr10:42596600-42600200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr10:42596600-42600200	ZNF genes & repeats	Small Intestine	intestine
21	chr10:42596600-42600200	ZNF genes & repeats	Stomach Mucosa	stomach
22	chr10:42596600-42600200	ZNF genes & repeats	Spleen	Spleen
23	chr10:42596600-42600200	ZNF genes & repeats	HSMMtube	muscle
24	chr10:42596600-42600200	ZNF genes & repeats	Osteobl	bone
25	chr10:42596600-42600400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:42596600-42600400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
29	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr10:42596600-42600400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr10:42596600-42600400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:42596600-42600400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
36	chr10:42596600-42600400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
37	chr10:42596600-42600400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr10:42596600-42600400	ZNF genes & repeats	GM12878-XiMat	blood
39	chr10:42596600-42600400	ZNF genes & repeats	Hela-S3	cervix
40	chr10:42596600-42600400	ZNF genes & repeats	NH-A	brain
41	chr10:42596600-42600600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr10:42596600-42600600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr10:42596600-42600600	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr10:42596600-42600600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
45	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr10:42596600-42600600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:42596600-42600600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
50	chr10:42596600-42600800	ZNF genes & repeats	HUVEC	blood vessel

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