Variant report

Variant	esv7622
Chromosome Location	chr10:42356789-42379940
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5340 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:5340 , 50 per page) page: 1 2 3 4 5 6 7 ... 107

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373110039	chr10:42356789-42356790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs59427932	chr10:42356790-42356791	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371744941	chr10:42356791-42356792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs200731226	chr10:42356793-42356794	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376891778	chr10:42356794-42356795	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs61794205	chr10:42356795-42356796	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs74192655	chr10:42356798-42356799	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs370659169	chr10:42356800-42356801	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs528725778	chr10:42356804-42356805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371510021	chr10:42356805-42356806	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374156834	chr10:42356808-42356809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs78953822	chr10:42356813-42356814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74196292	chr10:42356816-42356817	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs61794206	chr10:42356818-42356819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199887026	chr10:42356823-42356824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs36180779	chr10:42356826-42356827	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201145961	chr10:42356837-42356838	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201760781	chr10:42356845-42356846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200171786	chr10:42356846-42356847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568110505	chr10:42356847-42356848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200768759	chr10:42356850-42356851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368306189	chr10:42356860-42356861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551036202	chr10:42356870-42356871	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs36152366	chr10:42356879-42356880	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370049799	chr10:42356880-42356881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374082240	chr10:42356887-42356888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs137892101	chr10:42356888-42356889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144780133	chr10:42356889-42356890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570580910	chr10:42356893-42356894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200275694	chr10:42356894-42356895	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143593099	chr10:42356895-42356896	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539638956	chr10:42356898-42356899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs148886337	chr10:42356909-42356910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs202246886	chr10:42356910-42356911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs111208804	chr10:42356913-42356914	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146144359	chr10:42356914-42356915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200213921	chr10:42356925-42356926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373243510	chr10:42356940-42356941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs111078020	chr10:42356944-42356945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs369015338	chr10:42356945-42356946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201511905	chr10:42356949-42356950	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs199669575	chr10:42356950-42356951	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552855832	chr10:42356958-42356959	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs373738130	chr10:42356959-42356960	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200363576	chr10:42356960-42356961	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs374220424	chr10:42356968-42356969	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200304328	chr10:42356983-42356984	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371109849	chr10:42356993-42356994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374254441	chr10:42357013-42357014	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs111208805	chr10:42357014-42357015	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:561 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42356800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
13	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
14	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
16	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
17	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
18	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
26	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
28	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
29	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
31	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
32	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
33	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
35	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
37	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
38	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
40	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
41	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr10:42355000-42366000	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr10:42355000-42366000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
50	chr10:42355000-42366000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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