Variant report

Variant	esv7892
Chromosome Location	chr10:383121-384021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:372012..377385-chr10:378663..387362,13	MCF-7	breast:
2	chr10:180432..181985-chr10:381159..384205,3	MCF-7	breast:
3	chr10:382961..385780-chr10:450030..452279,2	MCF-7	breast:
4	chr10:343153..345716-chr10:383491..385119,2	MCF-7	breast:
5	chr10:382178..386587-chr10:393776..396360,3	MCF-7	breast:
6	chr10:378453..381890-chr10:383620..386364,3	MCF-7	breast:
7	chr10:311595..313288-chr10:383819..386750,2	MCF-7	breast:
8	chr10:352835..354904-chr10:383242..385492,2	MCF-7	breast:
9	chr10:383639..386364-chr17:57922141..57924204,2	MCF-7	breast:
10	chr10:373968..376079-chr10:381911..385076,3	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZMYND11-2	chr10:383079-383236	NONHSAT010856
2	lnc-ZMYND11-2	chr10:383723-383927	NONHSAT010856

No data

Variant related genes	Relation type
ENSG00000151240	chromatin interactions
ENSG00000015171	chromatin interactions

Extended variants
information (count: 94 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191643094	chr10:383129-383130	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs545733740	chr10:383134-383135	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs62638886	chr10:383172-383173	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs62639298	chr10:383177-383178	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs562439923	chr10:383182-383183	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs368594700	chr10:383191-383192	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs62638887	chr10:383201-383202	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs62638888	chr10:383206-383207	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs62638889	chr10:383208-383209	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs71376816	chr10:383222-383223	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs368292128	chr10:383223-383224	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs111164614	chr10:383234-383235	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs537765230	chr10:383241-383242	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs541408752	chr10:383251-383252	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs561491423	chr10:383259-383260	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs370947577	chr10:383289-383290	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs527402558	chr10:383290-383291	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs375298354	chr10:383291-383292	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs571032341	chr10:383292-383293	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs533554612	chr10:383301-383302	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs550539608	chr10:383314-383315	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs570340215	chr10:383324-383325	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs536125225	chr10:383332-383333	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs56154117	chr10:383343-383344	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs565891054	chr10:383344-383345	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs114903536	chr10:383345-383346	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs535130790	chr10:383352-383353	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs557962056	chr10:383368-383369	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs62638891	chr10:383376-383377	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs577016342	chr10:383380-383381	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs111170431	chr10:383389-383390	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs202221102	chr10:383390-383391	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs545572294	chr10:383392-383393	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs62644036	chr10:383401-383402	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs62638892	chr10:383410-383411	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs62638890	chr10:383412-383413	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs62638894	chr10:383415-383416	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs62644037	chr10:383421-383422	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs556072898	chr10:383422-383423	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs371093322	chr10:383450-383451	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs370134505	chr10:383463-383464	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs575947927	chr10:383466-383467	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs373844306	chr10:383467-383468	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs183784206	chr10:383488-383489	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs561726466	chr10:383521-383522	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs547049566	chr10:383522-383523	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs527251089	chr10:383528-383529	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs541160070	chr10:383537-383538	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs200016231	chr10:383549-383550	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs564019985	chr10:383555-383556	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:158 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:364600-383200	Weak transcription	Fetal Heart	heart
2	chr10:370400-418200	Weak transcription	Small Intestine	intestine
3	chr10:372800-386800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:375600-386600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:375800-383200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:375800-383200	Weak transcription	Ovary	ovary
7	chr10:375800-384600	Weak transcription	Colonic Mucosa	Colon
8	chr10:375800-402200	Weak transcription	Psoas Muscle	Psoas
9	chr10:375800-418800	Weak transcription	Right Atrium	heart
10	chr10:375800-419800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:376000-383200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:376200-383400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:378600-383200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:379400-384200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr10:379600-384600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:379600-384800	Weak transcription	Thymus	Thymus
17	chr10:379800-383200	Weak transcription	Fetal Thymus	thymus
18	chr10:379800-393600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:380000-383200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:380000-384400	Weak transcription	Dnd41	blood
21	chr10:380200-388600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:380200-389000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:380200-389600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:380200-390400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:380200-397400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr10:380200-397400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:380200-423200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:380400-397400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:380800-384400	Strong transcription	Colon Smooth Muscle	Colon
30	chr10:380800-385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:381000-391400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:381000-391600	Strong transcription	Brain Germinal Matrix	brain
33	chr10:381000-397400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:381200-384000	Strong transcription	Brain Hippocampus Middle	brain
35	chr10:381200-384000	Strong transcription	Brain Substantia Nigra	brain
36	chr10:381200-384200	Strong transcription	Brain Angular Gyrus	brain
37	chr10:381200-384600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:381200-384600	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:381200-391400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:381200-391400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:381200-391600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:381200-391600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:381400-383400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:381400-384200	Strong transcription	Fetal Intestine Small	intestine
45	chr10:381400-384400	Strong transcription	Adipose Nuclei	Adipose
46	chr10:381400-384400	Strong transcription	Brain Anterior Caudate	brain
47	chr10:381400-384400	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr10:381400-384600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:381400-384600	Strong transcription	Fetal Stomach	stomach
50	chr10:381400-391200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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