Variant report

Variant	esv7951
Chromosome Location	chr10:42389295-42396904
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
2	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
3	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
2	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

Extended variants
information (count: 2442 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2442 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564300007	chr10:42389295-42389296	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs533113104	chr10:42389300-42389301	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs140441082	chr10:42389305-42389306	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs28815852	chr10:42389310-42389311	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs546928108	chr10:42389321-42389322	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs12249005	chr10:42389322-42389323	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs36134817	chr10:42389327-42389328	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs71297036	chr10:42389329-42389330	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs548966426	chr10:42389331-42389332	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs28809343	chr10:42389334-42389335	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs376868037	chr10:42389340-42389341	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs28797472	chr10:42389356-42389357	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs71250193	chr10:42389358-42389359	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs537925578	chr10:42389363-42389364	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs28790406	chr10:42389370-42389371	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs71233794	chr10:42389378-42389379	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs28886391	chr10:42389388-42389389	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs28858739	chr10:42389395-42389396	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs142816993	chr10:42389398-42389399	ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs71297037	chr10:42389411-42389412	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs371549575	chr10:42389415-42389416	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs12782735	chr10:42389419-42389420	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs9702341	chr10:42389431-42389432	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs12763567	chr10:42389440-42389441	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs374198693	chr10:42389444-42389445	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs78117499	chr10:42389450-42389451	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs71185231	chr10:42389451-42389452	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs12763574	chr10:42389452-42389453	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs201788635	chr10:42389462-42389463	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs539599508	chr10:42389465-42389466	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs36133238	chr10:42389472-42389473	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs71234882	chr10:42389477-42389478	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs150750172	chr10:42389478-42389479	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs573165651	chr10:42389482-42389483	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs34088445	chr10:42389492-42389493	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs34162163	chr10:42389493-42389494	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs139161090	chr10:42389494-42389495	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs541854952	chr10:42389499-42389500	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs144032645	chr10:42389504-42389505	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs368349659	chr10:42389507-42389508	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs370595051	chr10:42389509-42389510	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs71254660	chr10:42389519-42389520	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs201255947	chr10:42389527-42389528	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs12411450	chr10:42389530-42389531	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs74200373	chr10:42389532-42389533	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs71214301	chr10:42389538-42389539	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs564381143	chr10:42389540-42389541	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs515302	chr10:42389547-42389548	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs515326	chr10:42389554-42389555	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs375412087	chr10:42389556-42389557	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:175 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
2	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
3	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
4	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
5	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
6	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
8	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
25	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
26	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
28	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
30	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
31	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
37	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
38	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
39	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
40	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
41	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
42	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
44	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
46	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
47	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
48	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
50	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links