Variant report

Variant	esv7957
Chromosome Location	chr10:42398993-42404719
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
2	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:
3	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
4	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
5	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
6	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
7	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
2	lnc-BMS1-12	chr10:42399434-42399525	NONHSAT012847
3	lnc-BMS1-12	chr10:42399130-42399193	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions

Extended variants
information (count: 1530 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:1530 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369864145	chr10:42399002-42399003	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs374221613	chr10:42399005-42399006	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs377624022	chr10:42399008-42399009	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs370545641	chr10:42399010-42399011	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs374568192	chr10:42399016-42399017	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs376561547	chr10:42399020-42399021	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs370205449	chr10:42399022-42399023	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs61847622	chr10:42399023-42399024	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs11266140	chr10:42399025-42399026	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs61847623	chr10:42399029-42399030	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376173434	chr10:42399031-42399032	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs61847624	chr10:42399035-42399036	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs61847625	chr10:42399037-42399038	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs532417561	chr10:42399039-42399040	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370555410	chr10:42399041-42399042	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs373655799	chr10:42399043-42399044	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs368750684	chr10:42399047-42399048	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs113691641	chr10:42399050-42399051	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs61847626	chr10:42399053-42399054	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs372149449	chr10:42399059-42399060	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs374334486	chr10:42399061-42399062	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs368222444	chr10:42399064-42399065	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs199578043	chr10:42399067-42399068	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs60101491	chr10:42399069-42399070	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs367588271	chr10:42399070-42399071	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs371715303	chr10:42399071-42399072	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs376288440	chr10:42399073-42399074	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs369268163	chr10:42399074-42399075	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs371893783	chr10:42399077-42399078	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs376482468	chr10:42399078-42399079	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs79134119	chr10:42399079-42399080	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs112466397	chr10:42399084-42399085	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs370000056	chr10:42399092-42399093	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs138464817	chr10:42399093-42399094	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs79933153	chr10:42399094-42399095	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs371380025	chr10:42399095-42399096	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs78906793	chr10:42399097-42399098	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs74892371	chr10:42399098-42399099	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs374339694	chr10:42399103-42399104	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs537225860	chr10:42399105-42399106	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs377653209	chr10:42399107-42399108	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs77067188	chr10:42399108-42399109	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs372636404	chr10:42399109-42399110	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs373124905	chr10:42399112-42399113	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs111390339	chr10:42399114-42399115	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs36015066	chr10:42399115-42399116	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs71208326	chr10:42399118-42399119	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs377237737	chr10:42399126-42399127	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs80324887	chr10:42399127-42399128	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs79555282	chr10:42399128-42399129	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:371 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
3	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
10	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
23	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
25	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
26	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
28	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
29	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
31	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
32	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
33	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
34	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
35	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
37	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
38	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
39	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
41	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
42	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
43	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
45	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver
47	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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