Variant report

Variant	esv8397
Chromosome Location	chr10:42385347-42396221
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
2	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:
3	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
4	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
5	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
6	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
7	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
8	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
2	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
3	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000261842	chromatin interactions
ENSG00000011485	chromatin interactions
ENSG00000198931	chromatin interactions

Extended variants
information (count: 3549 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:3549 , 50 per page) page: 1 2 3 4 5 6 7 ... 71

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4260390	chr10:42385347-42385348	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs4092970	chr10:42385348-42385349	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs534130291	chr10:42385349-42385350	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs71267732	chr10:42385351-42385352	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs78439961	chr10:42385353-42385354	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs28850886	chr10:42385354-42385355	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs4383478	chr10:42385355-42385356	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs4464403	chr10:42385356-42385357	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs4260388	chr10:42385357-42385358	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs567882847	chr10:42385358-42385359	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs28831379	chr10:42385362-42385363	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs4569615	chr10:42385363-42385364	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs28749273	chr10:42385367-42385368	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs536939625	chr10:42385368-42385369	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs71502107	chr10:42385370-42385371	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs2448325	chr10:42385373-42385374	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs4092971	chr10:42385377-42385378	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs35801087	chr10:42385378-42385379	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs2678728	chr10:42385381-42385382	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs74217876	chr10:42385383-42385384	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs12049634	chr10:42385385-42385386	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs74185103	chr10:42385386-42385387	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs4249269	chr10:42385394-42385395	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs74206681	chr10:42385396-42385397	ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs4260386	chr10:42385403-42385404	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs74197378	chr10:42385410-42385411	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs74207939	chr10:42385414-42385415	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs576502564	chr10:42385416-42385417	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs4337616	chr10:42385417-42385418	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs4389445	chr10:42385419-42385420	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs1141202	chr10:42385424-42385425	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs75199763	chr10:42385425-42385426	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs78961114	chr10:42385426-42385427	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs79442841	chr10:42385427-42385428	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs58697832	chr10:42385430-42385431	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs559104770	chr10:42385432-42385433	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs76033477	chr10:42385434-42385435	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs9703862	chr10:42385435-42385436	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs79026075	chr10:42385437-42385438	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs76269518	chr10:42385440-42385441	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs76745707	chr10:42385442-42385443	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs78508263	chr10:42385444-42385445	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs79987061	chr10:42385446-42385447	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs4494892	chr10:42385447-42385448	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs77035125	chr10:42385448-42385449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs79781216	chr10:42385453-42385454	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs76122476	chr10:42385454-42385455	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs28841595	chr10:42385456-42385457	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs9664997	chr10:42385458-42385459	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs75899743	chr10:42385460-42385461	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:251 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42385400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:42373600-42385600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:42373600-42385600	ZNF genes & repeats	Lung	lung
4	chr10:42373600-42385800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:42373600-42385800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
6	chr10:42373600-42385800	ZNF genes & repeats	Pancreas	Pancrea
7	chr10:42373600-42385800	ZNF genes & repeats	K562	blood
8	chr10:42373600-42386000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:42373600-42386000	ZNF genes & repeats	Aorta	Aorta
10	chr10:42373600-42387800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
11	chr10:42373600-42388200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr10:42373600-42388200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr10:42373600-42388200	ZNF genes & repeats	Placenta	Placenta
14	chr10:42373600-42388200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
15	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
16	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
17	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
18	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
19	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
20	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
21	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
22	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
24	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
36	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
37	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
38	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
42	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
44	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
45	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
46	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
47	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
48	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
49	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
50	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links