Variant report

Variant	esv8424
Chromosome Location	chr10:42385846-42396187
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
2	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
3	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
4	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
5	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
6	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
7	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
2	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
3	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000261842	chromatin interactions
ENSG00000198931	chromatin interactions

Extended variants
information (count: 3344 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:3344 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs59027871	chr10:42385848-42385849	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs534849082	chr10:42385849-42385850	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs555035410	chr10:42385853-42385854	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs9665020	chr10:42385859-42385860	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs9663122	chr10:42385862-42385863	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs9702070	chr10:42385865-42385866	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs28847877	chr10:42385866-42385867	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs537274635	chr10:42385867-42385868	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs28844735	chr10:42385868-42385869	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs9703867	chr10:42385871-42385872	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs28858110	chr10:42385877-42385878	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs55694349	chr10:42385879-42385880	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs55954330	chr10:42385880-42385881	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs55944034	chr10:42385883-42385884	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs558970904	chr10:42385884-42385885	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs372726696	chr10:42385889-42385890	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs60845622	chr10:42385890-42385891	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs79816753	chr10:42385891-42385892	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs57033635	chr10:42385892-42385893	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs11266120	chr10:42385899-42385900	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs61577809	chr10:42385900-42385901	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs572788442	chr10:42385905-42385906	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs201913925	chr10:42385906-42385907	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs55739018	chr10:42385907-42385908	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs61847706	chr10:42385913-42385914	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs74389358	chr10:42385914-42385915	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs541421642	chr10:42385915-42385916	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs74523271	chr10:42385917-42385918	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs75813599	chr10:42385918-42385919	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs71278052	chr10:42385919-42385920	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs59077303	chr10:42385923-42385924	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs56789737	chr10:42385925-42385926	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs530492770	chr10:42385927-42385928	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs59708685	chr10:42385932-42385933	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs563855883	chr10:42385937-42385938	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs532883245	chr10:42385938-42385939	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs552899168	chr10:42385941-42385942	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs566117793	chr10:42385942-42385943	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs12098396	chr10:42385943-42385944	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs12098295	chr10:42385945-42385946	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs9702117	chr10:42385952-42385953	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs535024695	chr10:42385955-42385956	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs78016456	chr10:42385958-42385959	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs548240209	chr10:42385960-42385961	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs74993800	chr10:42385961-42385962	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs60741764	chr10:42385963-42385964	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs568557990	chr10:42385966-42385967	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs537135376	chr10:42385968-42385969	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs76809457	chr10:42385978-42385979	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs12098397	chr10:42385982-42385983	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:213 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42386000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:42373600-42386000	ZNF genes & repeats	Aorta	Aorta
3	chr10:42373600-42387800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
4	chr10:42373600-42388200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
5	chr10:42373600-42388200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
6	chr10:42373600-42388200	ZNF genes & repeats	Placenta	Placenta
7	chr10:42373600-42388200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
8	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
9	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
10	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
11	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
12	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
13	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
14	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
15	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
17	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
24	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
25	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
30	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
31	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
32	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
35	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
37	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
39	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
40	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
41	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
43	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
45	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
46	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
47	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
48	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
49	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon

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