Variant report

Variant	esv8570
Chromosome Location	chr10:42391829-42396911
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
2	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
3	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:

Extended variants
information (count: 1609 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1609 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs80182569	chr10:42391836-42391837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150571496	chr10:42391839-42391840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141683100	chr10:42391840-42391841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs139563128	chr10:42391842-42391843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149757085	chr10:42391844-42391845	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144575466	chr10:42391846-42391847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs139463339	chr10:42391847-42391848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145001018	chr10:42391848-42391849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs76348674	chr10:42391849-42391850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78068358	chr10:42391852-42391853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs369307305	chr10:42391853-42391854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142104572	chr10:42391855-42391856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs142111054	chr10:42391857-42391858	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs565606902	chr10:42391859-42391860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs151312627	chr10:42391860-42391861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs140526394	chr10:42391863-42391864	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs34727703	chr10:42391865-42391866	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs146625892	chr10:42391871-42391872	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75053376	chr10:42391874-42391875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141238732	chr10:42391877-42391878	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs78375563	chr10:42391878-42391879	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138804263	chr10:42391881-42391882	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs142080191	chr10:42391882-42391883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs143706455	chr10:42391883-42391884	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs77082974	chr10:42391887-42391888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs568109846	chr10:42391888-42391889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141235051	chr10:42391890-42391891	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150801634	chr10:42391892-42391893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs139799305	chr10:42391893-42391894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557055162	chr10:42391903-42391904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs77512534	chr10:42391904-42391905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576715059	chr10:42391907-42391908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545582942	chr10:42391908-42391909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs75195579	chr10:42391911-42391912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs74847494	chr10:42391912-42391913	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs559326601	chr10:42391913-42391914	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76546258	chr10:42391914-42391915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572676772	chr10:42391932-42391933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76008074	chr10:42391933-42391934	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561322878	chr10:42391934-42391935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs80167143	chr10:42391938-42391939	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs76898197	chr10:42391939-42391940	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs79096064	chr10:42391940-42391941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113648897	chr10:42391942-42391943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs71262449	chr10:42391943-42391944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs543898856	chr10:42391944-42391945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563415612	chr10:42391945-42391946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs75487236	chr10:42391946-42391947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs74220426	chr10:42391952-42391953	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs79464679	chr10:42391953-42391954	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:156 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
2	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
7	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
29	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
30	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
31	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
36	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
37	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
38	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
39	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
47	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
49	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver

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