Variant report

Variant	esv8628
Chromosome Location	chr10:42399681-42404445
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
2	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
3	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
4	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
5	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
6	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions

Extended variants
information (count: 1236 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1236 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375123984	chr10:42399683-42399684	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs553297541	chr10:42399685-42399686	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs76252694	chr10:42399690-42399691	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs567019479	chr10:42399694-42399695	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs535794396	chr10:42399695-42399696	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs61847637	chr10:42399697-42399698	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs556073500	chr10:42399703-42399704	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs575742515	chr10:42399710-42399711	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs544615930	chr10:42399715-42399716	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs558137821	chr10:42399716-42399717	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs11818309	chr10:42399717-42399718	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs79247043	chr10:42399719-42399720	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs540688930	chr10:42399720-42399721	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs78725725	chr10:42399726-42399727	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs76041404	chr10:42399727-42399728	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs369295278	chr10:42399732-42399733	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs560112926	chr10:42399737-42399738	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs529065926	chr10:42399738-42399739	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs371516751	chr10:42399739-42399740	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs375875103	chr10:42399743-42399744	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs368856099	chr10:42399746-42399747	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs9703676	chr10:42399749-42399750	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs61847649	chr10:42399751-42399752	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs373056594	chr10:42399752-42399753	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs78315336	chr10:42399756-42399757	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs147758272	chr10:42399758-42399759	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs77327080	chr10:42399762-42399763	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs77449655	chr10:42399769-42399770	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs531251212	chr10:42399770-42399771	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs377049053	chr10:42399771-42399772	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs369860200	chr10:42399773-42399774	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs74647513	chr10:42399777-42399778	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs374218259	chr10:42399778-42399779	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs377621361	chr10:42399781-42399782	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs547440883	chr10:42399782-42399783	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs370687273	chr10:42399783-42399784	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs373849557	chr10:42399787-42399788	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs12772109	chr10:42399793-42399794	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs556143302	chr10:42399797-42399798	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs377174854	chr10:42399800-42399801	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs77479951	chr10:42399804-42399805	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs75430924	chr10:42399805-42399806	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs538499592	chr10:42399811-42399812	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs201209465	chr10:42399813-42399814	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs187502170	chr10:42399814-42399815	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs144492455	chr10:42399815-42399816	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs79678491	chr10:42399817-42399818	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs368728359	chr10:42399818-42399819	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs557883215	chr10:42399820-42399821	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs577944482	chr10:42399823-42399824	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:347 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
8	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
13	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
21	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
23	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
24	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
25	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
30	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
31	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
32	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
33	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
35	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
36	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
39	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
41	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
42	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
43	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver
45	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr10:42373600-42409600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr10:42373600-42409800	ZNF genes & repeats	Primary T cells from cord blood	blood

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