Variant report

Variant	esv9208
Chromosome Location	chr8:38902872-38903056
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372637822	chr8:38902874-38902875	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs143986426	chr8:38902877-38902878	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs570845636	chr8:38902881-38902882	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs146465546	chr8:38902882-38902883	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs539576878	chr8:38902884-38902885	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546768064	chr8:38902886-38902887	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs191371159	chr8:38902890-38902891	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs114563394	chr8:38902894-38902895	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs575204301	chr8:38902903-38902904	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372623197	chr8:38902904-38902905	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs372568937	chr8:38902907-38902908	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs202126295	chr8:38902911-38902912	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs535715297	chr8:38902926-38902927	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs376655095	chr8:38902929-38902930	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs369951330	chr8:38902931-38902932	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs11779834	chr8:38902932-38902933	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs372897109	chr8:38902939-38902940	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs111936542	chr8:38902940-38902941	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536640791	chr8:38902943-38902944	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs111205525	chr8:38902958-38902959	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs368884578	chr8:38902965-38902966	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs577000993	chr8:38902969-38902970	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs373563341	chr8:38902991-38902992	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545946054	chr8:38902995-38902996	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs553177541	chr8:38903004-38903005	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113298675	chr8:38903015-38903016	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573092474	chr8:38903026-38903027	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11777149	chr8:38903029-38903030	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs561830099	chr8:38903033-38903034	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	21979893	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hepatocellular carcinoma	16750200	CNVD
Bladder cancer	19088036	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17001308	CNVD
Breast cancer	17157792	CNVD
Cancer	17001308	CNVD
Cancer	18840272	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Chordoma	18071362	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21785460	CNVD
abnormal development	18461090	CNVD
Breast cancer	16620391	CNVD
Adrenocortical carcinoma	18281524	CNVD
Rhabdomyosarcoma	16790082	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21138945	CNVD
Lung cancer	21569311	CNVD
Breast cancer	21364760	CNVD
Prader-willi syndrome	20588305	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Cancer	20164919	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
2	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
5	chr8:38885800-38911200	Weak transcription	Ovary	ovary
6	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
8	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
9	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
10	chr8:38890000-38904400	Weak transcription	Gastric	stomach
11	chr8:38890200-38904400	Weak transcription	Esophagus	oesophagus
12	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:38890400-38903400	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:38890400-38904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:38890400-38904200	Weak transcription	Fetal Intestine Small	intestine
17	chr8:38890400-38904200	Weak transcription	Lung	lung
18	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
20	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:38896200-38907600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
24	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
25	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:38896400-38916400	Weak transcription	K562	blood
27	chr8:38896600-38905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:38896800-38904000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:38896800-38911200	Weak transcription	Adipose Nuclei	Adipose
31	chr8:38897200-38907000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:38897200-38907800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr8:38897200-38911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:38897400-38963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr8:38897600-38903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:38897600-38918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:38899800-38911400	Weak transcription	Brain Angular Gyrus	brain
38	chr8:38899800-38916600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:38900000-38903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:38900000-38903400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:38900000-38905800	Weak transcription	Liver	Liver
42	chr8:38900000-38911200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:38900000-38911400	Weak transcription	Brain Substantia Nigra	brain
44	chr8:38900200-38904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:38900200-38905200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr8:38900200-38905400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:38900200-38905600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:38900200-38906200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr8:38900200-38911200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr8:38900400-38903400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links