Variant report

Variant	esv9671
Chromosome Location	chr10:39094316-39111113
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2997 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:2997 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560569112	chr10:39094316-39094317	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs113910455	chr10:39094319-39094320	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs527413953	chr10:39094321-39094322	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs372829539	chr10:39094331-39094332	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs569542709	chr10:39094336-39094337	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs61839025	chr10:39094346-39094347	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs538256846	chr10:39094354-39094355	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs61839026	chr10:39094359-39094360	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs61839027	chr10:39094362-39094363	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs61839028	chr10:39094364-39094365	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs61839029	chr10:39094367-39094368	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs200195657	chr10:39094371-39094372	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs202000729	chr10:39094381-39094382	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs376979120	chr10:39094384-39094385	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs554227468	chr10:39094386-39094387	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs61839030	chr10:39094387-39094388	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs200434447	chr10:39094389-39094390	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs529798290	chr10:39094390-39094391	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs61839031	chr10:39094392-39094393	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs113182561	chr10:39094393-39094394	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs140123199	chr10:39094396-39094397	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs556062643	chr10:39094409-39094410	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs575898657	chr10:39094411-39094412	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs111695153	chr10:39094419-39094420	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs201109898	chr10:39094420-39094421	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs200921221	chr10:39094426-39094427	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs74394692	chr10:39094431-39094432	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs201760666	chr10:39094435-39094436	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs77662432	chr10:39094439-39094440	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs200015939	chr10:39094440-39094441	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs79491679	chr10:39094441-39094442	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs77715825	chr10:39094442-39094443	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs75322172	chr10:39094448-39094449	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs367752348	chr10:39094449-39094450	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs75226319	chr10:39094459-39094460	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs544616538	chr10:39094461-39094462	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs74927647	chr10:39094466-39094467	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs76838781	chr10:39094468-39094469	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs141465550	chr10:39094471-39094472	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs76143613	chr10:39094474-39094475	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs78242178	chr10:39094486-39094487	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs75902015	chr10:39094489-39094490	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs373266150	chr10:39094494-39094495	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs572005475	chr10:39094496-39094497	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs79113874	chr10:39094501-39094502	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs540809243	chr10:39094504-39094505	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs76382491	chr10:39094505-39094506	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs76651545	chr10:39094506-39094507	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs550056015	chr10:39094519-39094520	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs529484412	chr10:39094520-39094521	ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:195 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
3	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
6	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
7	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
8	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
9	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
13	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
15	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
16	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
19	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
21	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
35	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
39	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
40	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
41	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
42	chr10:39076800-39095000	ZNF genes & repeats	A549	lung
43	chr10:39076800-39095000	ZNF genes & repeats	GM12878-XiMat	blood
44	chr10:39076800-39095200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr10:39076800-39098800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
47	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
49	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
50	chr10:39082000-39097600	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links