Variant report

Variant	esv9833
Chromosome Location	chr18:12503702-12504211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556277390	chr18:12503744-12503745	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs555058412	chr18:12503901-12503902	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573225628	chr18:12503902-12503903	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577777760	chr18:12503922-12503923	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541942215	chr18:12504068-12504069	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs149328424	chr18:12504072-12504073	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540822817	chr18:12504100-12504101	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs560143204	chr18:12504120-12504121	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs112835651	chr18:12504146-12504147	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542554770	chr18:12504193-12504194	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
Autism	20808228	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	21922591	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	17377590	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Myelofibrosis	22110671	CNVD
Retinoblastoma	21504564	CNVD
Glioma	17123091	CNVD
Neurodevelopmental disorder	22521361	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12460200-12516600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:12478400-12512600	Weak transcription	Fetal Intestine Small	intestine
3	chr18:12478600-12506400	Weak transcription	Right Ventricle	heart
4	chr18:12478600-12510800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:12478800-12504800	Weak transcription	Gastric	stomach
6	chr18:12478800-12505800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr18:12478800-12514200	Weak transcription	NH-A	brain
8	chr18:12478800-12515800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr18:12478800-12515800	Weak transcription	Placenta	Placenta
10	chr18:12478800-12551800	Weak transcription	Pancreas	Pancrea
11	chr18:12480800-12511000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:12486200-12504600	Weak transcription	HMEC	breast
13	chr18:12491600-12510800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr18:12492000-12504800	Weak transcription	Aorta	Aorta
15	chr18:12492200-12530400	Weak transcription	HepG2	liver
16	chr18:12492200-12532800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr18:12492200-12548600	Weak transcription	Fetal Kidney	kidney
18	chr18:12492400-12504800	Weak transcription	Brain Hippocampus Middle	brain
19	chr18:12492400-12515600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr18:12492600-12504800	Weak transcription	Fetal Heart	heart
21	chr18:12492800-12510800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr18:12493000-12541200	Weak transcription	NHEK	skin
23	chr18:12493200-12506400	Weak transcription	Left Ventricle	heart
24	chr18:12493200-12510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr18:12493200-12512600	Weak transcription	Fetal Brain Male	brain
26	chr18:12493200-12518400	Weak transcription	Esophagus	oesophagus
27	chr18:12493200-12520000	Weak transcription	Colon Smooth Muscle	Colon
28	chr18:12493200-12520400	Weak transcription	Psoas Muscle	Psoas
29	chr18:12493200-12551800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr18:12493400-12515800	Weak transcription	Brain Substantia Nigra	brain
31	chr18:12493800-12504800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr18:12494000-12515000	Weak transcription	Fetal Lung	lung
33	chr18:12494200-12504800	Weak transcription	Brain Anterior Caudate	brain
34	chr18:12494200-12515000	Weak transcription	HUVEC	blood vessel
35	chr18:12494400-12515600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr18:12495400-12515800	Weak transcription	NHDF-Ad	bronchial
37	chr18:12495800-12504800	Weak transcription	Brain Germinal Matrix	brain
38	chr18:12496000-12504600	Weak transcription	Liver	Liver
39	chr18:12496000-12515000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr18:12496200-12505000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr18:12496200-12505000	Weak transcription	Osteobl	bone
42	chr18:12496400-12504400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr18:12497600-12518000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr18:12497800-12506200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr18:12500000-12509200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr18:12500800-12520600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr18:12501400-12507400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr18:12501600-12504000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr18:12501600-12506400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:12501800-12507600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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