Variant report
Variant | esv9834 |
---|---|
Chromosome Location | chr8:47723087-47738939 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:66)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BATF | chr8:47738438-47738681 | GM12878 | blood: | n/a | chr8:47738534-47738545 |
2 | CEBPB | chr8:47735917-47736098 | HepG2 | liver: | n/a | n/a |
3 | CEBPB | chr8:47733759-47733964 | A549 | lung: | n/a | n/a |
4 | CEBPB | chr8:47730627-47730869 | A549 | lung: | n/a | n/a |
5 | CEBPB | chr8:47726122-47726673 | Hela-S3 | cervix: | n/a | n/a |
6 | CEBPB | chr8:47737694-47737724 | HepG2 | liver: | n/a | n/a |
7 | CEBPB | chr8:47726143-47726477 | MCF-7 | breast: | n/a | n/a |
8 | CEBPB | chr8:47726150-47726880 | HepG2 | liver: | n/a | n/a |
9 | CEBPB | chr8:47732060-47732380 | MCF-7 | breast: | n/a | chr8:47732251-47732262 |
10 | CEBPB | chr8:47726198-47726696 | IMR90 | lung: | n/a | n/a |
11 | CEBPB | chr8:47730645-47730867 | HepG2 | liver: | n/a | n/a |
12 | CEBPB | chr8:47731371-47731837 | HepG2 | liver: | n/a | n/a |
13 | CEBPB | chr8:47728521-47729026 | HepG2 | liver: | n/a | n/a |
14 | CEBPB | chr8:47728857-47729192 | A549 | lung: | n/a | n/a |
15 | CEBPB | chr8:47732078-47732422 | A549 | lung: | n/a | chr8:47732251-47732262 |
16 | CEBPB | chr8:47733822-47733874 | HepG2 | liver: | n/a | n/a |
17 | CEBPB | chr8:47729741-47729838 | HepG2 | liver: | n/a | n/a |
18 | CEBPB | chr8:47732177-47732382 | H1-hESC | embryonic stem cell: | n/a | chr8:47732251-47732262 |
19 | CEBPB | chr8:47729582-47729782 | IMR90 | lung: | n/a | chr8:47729734-47729745 |
20 | CEBPB | chr8:47726092-47726550 | MCF-7 | breast: | n/a | n/a |
21 | CEBPB | chr8:47726154-47726589 | A549 | lung: | n/a | n/a |
22 | CEBPB | chr8:47732135-47732429 | IMR90 | lung: | n/a | chr8:47732251-47732262 |
23 | CEBPB | chr8:47732072-47732430 | HepG2 | liver: | n/a | chr8:47732251-47732262 |
24 | E2F4 | chr8:47726198-47726938 | MCF10A-Er-Src | breast: | n/a | n/a |
25 | E2F4 | chr8:47724095-47724379 | MCF10A-Er-Src | breast: | n/a | n/a |
26 | FOS | chr8:47726065-47726646 | MCF10A-Er-Src | breast: | n/a | n/a |
27 | FOS | chr8:47731464-47731652 | MCF10A-Er-Src | breast: | n/a | n/a |
28 | FOS | chr8:47728640-47729978 | MCF10A-Er-Src | breast: | n/a | n/a |
29 | FOS | chr8:47728779-47728990 | MCF10A-Er-Src | breast: | n/a | n/a |
30 | FOS | chr8:47729664-47729883 | MCF10A-Er-Src | breast: | n/a | n/a |
31 | FOS | chr8:47736607-47736882 | MCF10A-Er-Src | breast: | n/a | n/a |
32 | FOS | chr8:47726028-47726759 | MCF10A-Er-Src | breast: | n/a | n/a |
33 | FOS | chr8:47736730-47736930 | MCF10A-Er-Src | breast: | n/a | n/a |
34 | FOS | chr8:47729619-47729790 | MCF10A-Er-Src | breast: | n/a | n/a |
35 | FOS | chr8:47728745-47729074 | MCF10A-Er-Src | breast: | n/a | n/a |
36 | FOS | chr8:47726065-47726666 | MCF10A-Er-Src | breast: | n/a | n/a |
37 | FOS | chr8:47728642-47729369 | MCF10A-Er-Src | breast: | n/a | n/a |
38 | FOS | chr8:47726051-47726590 | MCF10A-Er-Src | breast: | n/a | n/a |
39 | MYC | chr8:47731384-47731431 | MCF10A-Er-Src | breast: | n/a | n/a |
40 | MYC | chr8:47726057-47726619 | MCF10A-Er-Src | breast: | n/a | n/a |
41 | MYC | chr8:47728816-47729016 | MCF10A-Er-Src | breast: | n/a | n/a |
42 | MYC | chr8:47726056-47726647 | MCF10A-Er-Src | breast: | n/a | n/a |
43 | NRF1 | chr8:47727005-47727023 | GM12878 | blood: | n/a | n/a |
44 | POLR2A | chr8:47728543-47728880 | MCF10A-Er-Src | breast: | n/a | n/a |
45 | POLR2A | chr8:47725956-47726481 | MCF10A-Er-Src | breast: | n/a | n/a |
46 | POLR2A | chr8:47726242-47726442 | MCF10A-Er-Src | breast: | n/a | n/a |
47 | POLR2A | chr8:47737008-47737120 | GM12878 | blood: | n/a | n/a |
48 | POLR2A | chr8:47728505-47728705 | MCF10A-Er-Src | breast: | n/a | n/a |
49 | POLR2A | chr8:47731903-47732068 | MCF10A-Er-Src | breast: | n/a | n/a |
50 | STAT3 | chr8:47728741-47729307 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-350F16.2.1-5 | chr8:47738850-47740031 | NONHSAT126413 |
2 | lnc-RP11-350F16.2.1-2 | chr8:47730635-47730705 | XLOC_007078 |
3 | lnc-RP11-350F16.2.1-2 | chr8:47722340-47723308 | XLOC_007078 |
4 | lnc-RP11-1134I14.8.1-3 | chr8:47733859-47734050 | ENSG00000253314.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
LINC00293 | TF binding region |
RNU6-656P | TF binding region |
USO1 | miRNA target sites |
PPARGC1A | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs552488958 | chr8:47723104-47723105 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs115928448 | chr8:47723128-47723129 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs538220566 | chr8:47723161-47723162 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs371651855 | chr8:47723165-47723166 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs556934215 | chr8:47723175-47723176 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs183650493 | chr8:47723238-47723239 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
7 | rs536351459 | chr8:47723244-47723245 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs535283775 | chr8:47723245-47723246 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs554463827 | chr8:47723275-47723276 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs145094969 | chr8:47728909-47728910 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs551192973 | chr8:47728913-47728914 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs566786967 | chr8:47728948-47728949 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs191009018 | chr8:47728957-47728958 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs551452903 | chr8:47728978-47728979 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs150959937 | chr8:47728985-47728986 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs375655009 | chr8:47728991-47728992 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs181763922 | chr8:47729010-47729011 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs140804952 | chr8:47729085-47729086 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs557213664 | chr8:47729089-47729090 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs186460519 | chr8:47729136-47729137 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs191435519 | chr8:47729141-47729142 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs183756550 | chr8:47729200-47729201 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs73676245 | chr8:47729213-47729214 | Inactive region | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs573130181 | chr8:47729217-47729218 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs113547297 | chr8:47729219-47729220 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs537026267 | chr8:47729256-47729257 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs577202851 | chr8:47729267-47729268 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs11990120 | chr8:47729355-47729356 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs562969216 | chr8:47729365-47729366 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs550898568 | chr8:47729368-47729369 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs541977560 | chr8:47729385-47729386 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs560315851 | chr8:47729389-47729390 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs527971019 | chr8:47729395-47729396 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs567918025 | chr8:47729397-47729398 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs564707967 | chr8:47729435-47729436 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs532104821 | chr8:47729468-47729469 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs369181047 | chr8:47729483-47729484 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs550322255 | chr8:47729504-47729505 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs568895172 | chr8:47729515-47729516 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs536358134 | chr8:47729600-47729601 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs535594107 | chr8:47729626-47729627 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs536468925 | chr8:47729631-47729632 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs553486698 | chr8:47729632-47729633 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs111829014 | chr8:47729650-47729651 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs187889526 | chr8:47729662-47729663 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs11777235 | chr8:47729693-47729694 | Inactive region | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs35969444 | chr8:47729695-47729696 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs191558799 | chr8:47729697-47729698 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs558841586 | chr8:47729706-47729707 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs376330050 | chr8:47729716-47729717 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Oral cancer | 21386901 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Seminomas | 18059402 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Lung cancer | 18438408 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Developmental delay | 21373258 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 17603634 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Testicular cancer | 18059402 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Esophageal cancer | 20955586 | CNVD |
abnormal development | 18461090 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 20164920 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Medulloblastoma | 20607354 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Langer-Giedion syndrome | 22283845 | CNVD |
Cancer | 21637783 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 20632083 | CNVD |
Breast cancer | 19602461 | CNVD |
Cancer | 22429812 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 19627613 | CNVD |
Prostate cancer | 21088497 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21264507 | CNVD |
Breast cancer | 22028636 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 20409316 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Gastric cancer | 17167181 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 16461572 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
head and neck squamous cell carcinoma | 18028549 | CNVD |
Breast cancer | 17001317 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:47733800-47736400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |