Variant report

Variant	esv997980
Chromosome Location	chr10:19088017-19099867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:19088836..19091011-chr10:19160637..19163286,2	MCF-7	breast:

Extended variants
information (count: 242 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:242 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10826460	chr10:19088072-19088073	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs146794053	chr10:19088080-19088081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs375554494	chr10:19088082-19088083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547086593	chr10:19088095-19088096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186639023	chr10:19088104-19088105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539225245	chr10:19088134-19088135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs557232984	chr10:19088141-19088142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569257942	chr10:19088142-19088143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2493627	chr10:19088161-19088162	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs554179878	chr10:19088166-19088167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs572521502	chr10:19088201-19088202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs539821729	chr10:19088218-19088219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140568879	chr10:19088223-19088224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376785604	chr10:19088228-19088229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558625022	chr10:19088229-19088230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142877133	chr10:19088309-19088310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544437930	chr10:19088321-19088322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192534886	chr10:19088385-19088386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184913126	chr10:19088407-19088408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542127957	chr10:19088438-19088439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs72777176	chr10:19088452-19088453	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs575483993	chr10:19088453-19088454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs151074628	chr10:19088480-19088481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545696342	chr10:19088490-19088491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374976429	chr10:19088576-19088577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs12254577	chr10:19088589-19088590	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs569093940	chr10:19088599-19088600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs536415470	chr10:19088650-19088651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141044104	chr10:19088655-19088656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs566778778	chr10:19088675-19088676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs150251745	chr10:19088677-19088678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139330724	chr10:19088718-19088719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs576920391	chr10:19088736-19088737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141873531	chr10:19088749-19088750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs556424338	chr10:19088756-19088757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574697756	chr10:19088804-19088805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188821078	chr10:19088812-19088813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528352348	chr10:19088813-19088814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11007066	chr10:19088831-19088832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542017458	chr10:19088872-19088873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540567239	chr10:19088904-19088905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117256846	chr10:19088937-19088938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs145736844	chr10:19088987-19088988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs534771317	chr10:19089001-19089002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561335543	chr10:19089040-19089041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532674028	chr10:19089057-19089058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528864560	chr10:19089075-19089076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7908741	chr10:19089081-19089082	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs376411955	chr10:19089139-19089140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562615213	chr10:19089166-19089167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:19091200-19091600	Enhancers	Fetal Intestine Large	intestine
3	chr10:19093200-19093600	Enhancers	Brain Hippocampus Middle	brain
4	chr10:19093200-19094000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:19093200-19094000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:19093400-19094000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:19093400-19094200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links