Variant report

Variant	nsv1000027
Chromosome Location	chr1:196709223-196802060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:196712502-196712701	K562	blood:	n/a	n/a
2	BATF	chr1:196743800-196744098	GM12878	blood:	n/a	chr1:196743977-196743985
3	CEBPB	chr1:196792559-196792845	IMR90	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
4	CEBPB	chr1:196745101-196745132	IMR90	lung:	n/a	n/a
5	CEBPB	chr1:196792584-196792829	HepG2	liver:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792697-196792706
6	CEBPB	chr1:196792658-196792868	A549	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
7	CTCF	chr1:196712480-196712630	HMF	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
8	CTCF	chr1:196797260-196797410	A549	lung:	n/a	n/a
9	CTCF	chr1:196712500-196712650	HMF	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
10	CTCF	chr1:196712480-196712630	GM12865	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
11	CTCF	chr1:196733064-196733089	MCF-7	breast:	n/a	n/a
12	CTCF	chr1:196712244-196712697	LNCaP	prostate:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
13	CTCF	chr1:196796360-196796510	NB4	blood:	n/a	n/a
14	CTCF	chr1:196797080-196797230	HCFaa	heart:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
15	CTCF	chr1:196765785-196765811	MCF-7	breast:	n/a	n/a
16	CTCF	chr1:196797080-196797230	AG04450	lung:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
17	CTCF	chr1:196797100-196797250	HVMF	connective:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
18	CTCF	chr1:196797089-196797305	H1-hESC	embryonic stem cell:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
19	CTCF	chr1:196797063-196797239	K562	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
20	CTCF	chr1:196797088-196797235	SK-N-SH_RA	brain:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
21	CTCF	chr1:196712532-196712590	GM10248	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
22	CTCF	chr1:196712487-196712627	GM13977	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
23	CTCF	chr1:196712560-196712710	NHDF-neo	bronchial:	n/a	n/a
24	CTCF	chr1:196765360-196765368	MCF-7	breast:	n/a	n/a
25	CTCF	chr1:196748280-196748430	HEEpiC	esophagus:	n/a	n/a
26	CTCF	chr1:196748380-196748530	GM12872	blood:	n/a	n/a
27	CTCF	chr1:196712480-196712630	HMEC	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
28	CTCF	chr1:196797120-196797270	SAEC	small airway:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
29	CTCF	chr1:196797100-196797250	GM12872	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
30	CTCF	chr1:196748419-196748465	MCF-7	breast:	n/a	n/a
31	CTCF	chr1:196797080-196797230	Caco-2	colon:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
32	CTCF	chr1:196712447-196712671	Hela-S3	cervix:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
33	CTCF	chr1:196712500-196712650	AG04450	lung:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
34	CTCF	chr1:196712342-196712724	HepG2	liver:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
35	CTCF	chr1:196797028-196797313	HCT-116	colon:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
36	CTCF	chr1:196712420-196712570	SK-N-SH_RA	brain:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
37	CTCF	chr1:196796892-196797472	A549	lung:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
38	CTCF	chr1:196712500-196712650	WERI-Rb-1	eye:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
39	CTCF	chr1:196797200-196797350	AG09309	skin:	n/a	n/a
40	CTCF	chr1:196712520-196712670	BJ	skin:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
41	CTCF	chr1:196712520-196712670	GM12872	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
42	CTCF	chr1:196797060-196797210	AG10803	skin:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
43	CTCF	chr1:196797060-196797210	HRE	kidney:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
44	CTCF	chr1:196712500-196712650	HRE	kidney:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
45	CTCF	chr1:196712480-196712630	BE2_C	brain:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
46	CTCF	chr1:196712480-196712630	GM12870	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
47	CTCF	chr1:196712269-196712787	A549	lung:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
48	CTCF	chr1:196797040-196797190	NHLF	lung:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
49	CTCF	chr1:196712418-196712668	Medullo	brain:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
50	CTCF	chr1:196712560-196712710	HFF-Myc	foreskin:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:196787850-196787900	HRPEpiC	eye:	n/a
2	chr1:196743672-196743722	GM12891	blood:	n/a
3	chr1:196795943-196795993	AG09309	skin:	n/a
4	chr1:196795943-196795993	HRE	kidney:	n/a
5	chr1:196795943-196795993	Caco-2	colon:	n/a
6	chr1:196795943-196795993	GM06990	blood:	n/a
7	chr1:196787850-196787900	NH-A	brain:	n/a
8	chr1:196787850-196787900	GM12878	blood:	n/a
9	chr1:196743672-196743722	AG10803	skin:	n/a
10	chr1:196746875-196746925	HEEpiC	esophagus:	n/a
11	chr1:196743672-196743722	HUVEC	blood vessel:	n/a
12	chr1:196746875-196746925	GM12891	blood:	n/a
13	chr1:196743672-196743722	PFSK-1	brain:	n/a
14	chr1:196787850-196787900	MCF10A-Er-Src	breast:	n/a
15	chr1:196787850-196787900	IMR90	lung:	fetal
16	chr1:196746875-196746925	U87	brain:	n/a
17	chr1:196746875-196746925	IMR90	lung:	fetal
18	chr1:196743672-196743722	AG04449	skin:	fetal
19	chr1:196743672-196743722	GM06990	blood:	n/a
20	chr1:196746875-196746925	SK-N-SH_RA	brain:	n/a
21	chr1:196795943-196795993	NHDF-neo	bronchial:	n/a
22	chr1:196787850-196787900	NT2-D1	testis:	n/a
23	chr1:196743672-196743722	NHDF-neo	bronchial:	n/a
24	chr1:196795943-196795993	Hepatocyte	liver:	n/a
25	chr1:196743672-196743722	LNCaP	prostate:	n/a
26	chr1:196795943-196795993	HEEpiC	esophagus:	n/a
27	chr1:196787850-196787900	ECC-1	luminal epithelium:	n/a
28	chr1:196743672-196743722	CMK	blood:	n/a
29	chr1:196795943-196795993	HepG2	liver:	n/a
30	chr1:196795943-196795993	RPTEC	kidney:	n/a
31	chr1:196746875-196746925	HL-60	blood:	n/a
32	chr1:196795943-196795993	A549	lung:	n/a
33	chr1:196746875-196746925	AG04450	lung:	fetal
34	chr1:196743672-196743722	HRPEpiC	eye:	n/a
35	chr1:196743672-196743722	AG09319	gingival:	n/a
36	chr1:196787850-196787900	H1-hESC	embryonic stem cell:	embryo
37	chr1:196746875-196746925	HCM	heart:	n/a
38	chr1:196746875-196746925	AG10803	skin:	n/a
39	chr1:196795943-196795993	HCM	heart:	n/a
40	chr1:196787850-196787900	LNCaP	prostate:	n/a
41	chr1:196746875-196746925	SK-N-MC	brain:	n/a
42	chr1:196746875-196746925	HCPEpiC	choroid plexus:	n/a
43	chr1:196795943-196795993	SK-N-SH_RA	brain:	n/a
44	chr1:196795943-196795993	AG04450	lung:	fetal
45	chr1:196746875-196746925	Hepatocyte	liver:	n/a
46	chr1:196787850-196787900	HRE	kidney:	n/a
47	chr1:196746875-196746925	PrEC	prostate:	n/a
48	chr1:196743672-196743722	HPAEpiC	pulmonary alveolar:	n/a
49	chr1:196787850-196787900	NHDF-neo	bronchial:	n/a
50	chr1:196743672-196743722	HRCEpiC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
2	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
3	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
4	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
5	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
6	chr1:196796721..196797658-chr1:196859492..196860452,2	MCF-7	breast:
7	chr1:196706600..196708493-chr1:196711945..196714734,2	K562	blood:
8	chr1:196738269..196739930-chr1:196742962..196745311,2	MCF-7	breast:
9	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
10	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
11	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
12	chr1:196712193..196713017-chr1:197326079..197326750,3	MCF-7	breast:
13	chr1:196712121..196712996-chr1:197035666..197036522,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFHR2-1	chr1:196794354-196794801	NONHSAT008603
2	lnc-CFHR2-1	chr1:196788952-196789032	NONHSAT008601
3	lnc-CFHR2-1	chr1:196797280-196797376	NONHSAT008600
4	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008603
5	lnc-CFHR2-1	chr1:196788995-196789032	NONHSAT008602
6	lnc-CFHR2-1	chr1:196794607-196795156	NONHSAT008602
7	lnc-CFHR1-1	chr1:196762447-196762763	NONHSAT008599
8	lnc-CFHR1-1	chr1:196758890-196759357	NONHSAT008599
9	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008600
10	lnc-CFHR2-1	chr1:196797200-196797225	NONHSAT008600
11	lnc-CFHR2-1	chr1:196790015-196790332	NONHSAT008601
12	lnc-CFHR2-1	chr1:196788893-196789032	NONHSAT008600
13	lnc-CFHR2-1	chr1:196797200-196797297	NONHSAT008603
14	lnc-CFHR2-1	chr1:196794607-196794801	NONHSAT008600

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CFH	hsa-miR-146a-5p	chr1:196716478-196716499

Variant related genes	Relation type
CFHR2	TF binding region
CFHR1	TF binding region
CFHR3	TF binding region
CFHR2	CpG island
CFHR1	CpG island
CFHR3	CpG island
ENSG00000116785	chromatin interactions
ENSG00000143278	chromatin interactions

Extended variants
information (count: 2673 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:2673 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs424535	chr1:196709223-196709224	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs141601348	chr1:196709234-196709235	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs552858795	chr1:196709259-196709260	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567903086	chr1:196709300-196709301	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535312078	chr1:196709321-196709322	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34557289	chr1:196709359-196709360	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575217641	chr1:196709372-196709373	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189159291	chr1:196709379-196709380	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs193067702	chr1:196709443-196709444	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs112452907	chr1:196709515-196709516	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs150713392	chr1:196709573-196709574	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs550942137	chr1:196709625-196709626	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs557890944	chr1:196709638-196709639	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs368319704	chr1:196709670-196709671	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs371965990	chr1:196709710-196709711	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs56050311	chr1:196709712-196709713	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs372283020	chr1:196709718-196709719	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs1065489	chr1:196709774-196709775	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs529491401	chr1:196709787-196709788	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs61755704	chr1:196709798-196709799	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs149474608	chr1:196709816-196709817	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs145975787	chr1:196709833-196709834	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs533238588	chr1:196709834-196709835	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs121913053	chr1:196709842-196709843	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs115722139	chr1:196709845-196709846	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs375951438	chr1:196709866-196709867	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs267598267	chr1:196709890-196709891	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs141804786	chr1:196709898-196709899	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs79934209	chr1:196709906-196709907	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs527724777	chr1:196709909-196709910	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs149938052	chr1:196709910-196709911	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs553471643	chr1:196709912-196709913	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs368886847	chr1:196709932-196709933	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs572034879	chr1:196709935-196709936	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs188452801	chr1:196709943-196709944	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs537015849	chr1:196709946-196709947	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs372923799	chr1:196709951-196709952	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs143385632	chr1:196710064-196710065	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs146737328	chr1:196710079-196710080	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs569037632	chr1:196710090-196710091	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs113990844	chr1:196710119-196710120	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs574535611	chr1:196710151-196710152	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs11582939	chr1:196710157-196710158	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs563645995	chr1:196710178-196710179	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs557878375	chr1:196710211-196710212	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572749191	chr1:196710250-196710251	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536374479	chr1:196710275-196710276	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556077846	chr1:196710308-196710309	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61822179	chr1:196710402-196710403	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs546664020	chr1:196710432-196710433	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196691200-196718400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr1:196702800-196709600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:196705400-196709600	ZNF genes & repeats	Dnd41	blood
4	chr1:196706000-196710600	Strong transcription	HSMM	muscle
5	chr1:196706000-196711400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:196706600-196709400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:196706600-196710200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:196707000-196709400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:196707000-196709400	Weak transcription	K562	blood
10	chr1:196707400-196722400	Weak transcription	Psoas Muscle	Psoas
11	chr1:196707800-196709400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr1:196707800-196712600	Weak transcription	NH-A	brain
13	chr1:196708000-196719800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:196708400-196709400	Weak transcription	Lung	lung
15	chr1:196708400-196711000	Weak transcription	Osteobl	bone
16	chr1:196708400-196711400	Strong transcription	Fetal Muscle Leg	muscle
17	chr1:196708400-196711600	Strong transcription	Ovary	ovary
18	chr1:196708400-196712000	Weak transcription	Small Intestine	intestine
19	chr1:196708400-196712800	Weak transcription	Fetal Stomach	stomach
20	chr1:196708400-196717200	Strong transcription	Liver	Liver
21	chr1:196708800-196709800	Weak transcription	Esophagus	oesophagus
22	chr1:196708800-196712600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:196708800-196718200	Weak transcription	Adipose Nuclei	Adipose
24	chr1:196709000-196709400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr1:196709000-196712000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:196709000-196712600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:196709200-196710200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:196709200-196712600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:196709200-196712600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:196709400-196710200	ZNF genes & repeats	K562	blood
31	chr1:196709400-196711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:196709400-196716800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:196709400-196716800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:196709400-196718000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:196709600-196710200	Weak transcription	Dnd41	blood
36	chr1:196710200-196711200	Strong transcription	Dnd41	blood
37	chr1:196710200-196711800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:196710200-196712000	Weak transcription	K562	blood
39	chr1:196710600-196718200	Weak transcription	HSMM	muscle
40	chr1:196711200-196711600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:196711200-196714600	Weak transcription	Dnd41	blood
42	chr1:196711400-196717800	Weak transcription	Fetal Muscle Leg	muscle
43	chr1:196711400-196719800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:196711600-196717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:196711600-196718000	Weak transcription	Ovary	ovary
46	chr1:196711800-196713400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:196712600-196712800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:196712600-196712800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:196712600-196712800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr1:196712800-196718400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

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