Variant report

Variant	nsv1000175
Chromosome Location	chr1:188933027-188975207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:188973723..188976058-chr1:189233583..189235147,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLA2G4A-17	chr1:188974191-188974263	refGeneNc_416_NR_033922

Extended variants
information (count: 319 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:319 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550090933	chr1:188936244-188936245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs528569630	chr1:188936245-188936246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs569862065	chr1:188936263-188936264	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs535693068	chr1:188936275-188936276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs189080817	chr1:188936285-188936286	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs565504125	chr1:188936307-188936308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs181822593	chr1:188936335-188936336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76509245	chr1:188936391-188936392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs75343408	chr1:188936441-188936442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs543441758	chr1:188936462-188936463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557280572	chr1:188936470-188936471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs141046034	chr1:188936505-188936506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs543274596	chr1:188936541-188936542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs560026102	chr1:188936543-188936544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs74572616	chr1:188936580-188936581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs111513682	chr1:188936582-188936583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs564162335	chr1:188936606-188936607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs148285722	chr1:188936671-188936672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs549512720	chr1:188936682-188936683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs569604362	chr1:188936710-188936711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs529189168	chr1:188936719-188936720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs13375699	chr1:188936730-188936731	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs565564117	chr1:188936756-188936757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs534504213	chr1:188936800-188936801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs550639970	chr1:188955607-188955608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs560780276	chr1:188955668-188955669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374611038	chr1:188955670-188955671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs35638418	chr1:188955686-188955687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs115073348	chr1:188955696-188955697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs79542875	chr1:188955727-188955728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs141806643	chr1:188955751-188955752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs183552810	chr1:188955754-188955755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs540741070	chr1:188955769-188955770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552426355	chr1:188955790-188955791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs117107598	chr1:188955798-188955799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs537997718	chr1:188955813-188955814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs146183175	chr1:188955815-188955816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs574795517	chr1:188955823-188955824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs73059850	chr1:188955828-188955829	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs553716628	chr1:188955838-188955839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs114352679	chr1:188955863-188955864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs12759467	chr1:188955897-188955898	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs562987248	chr1:188955906-188955907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs138234729	chr1:188955908-188955909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs576587478	chr1:188955918-188955919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs542010237	chr1:188955930-188955931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs563223103	chr1:188955934-188955935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs530749778	chr1:188955949-188955950	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs561059402	chr1:188955951-188955952	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs529778909	chr1:188955963-188955964	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
Myelofibrosis	22110671	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:188936200-188936800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:188955600-188956400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:188955800-188956400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:188955800-188956400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:188955800-188956600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:188956200-188956400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:188956200-188956600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:188956200-188956800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:188956400-188959200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:188956800-188961400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:188958800-188959400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:188959200-188960000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:188959400-188959600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:188959600-188961600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:188961400-188962600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:188961400-188963000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:188961600-188963000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:188962000-188962600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:188962000-188962600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:188962200-188962600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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