Variant report

Variant	nsv1000924
Chromosome Location	chr3:84683816-84711713
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-6	chr3:84687557-84688363	ENSG00000242641.1
2	lnc-VGLL3-6	chr3:84693364-84693437	NONHSAT090649
3	lnc-VGLL3-6	chr3:84687556-84688363	NONHSAT090649
4	lnc-VGLL3-6	chr3:84693364-84693437	ENSG00000242641.1

Extended variants
information (count: 385 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:385 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549925651	chr3:84686407-84686408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs568744093	chr3:84686459-84686460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs576427488	chr3:84686468-84686469	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs536162332	chr3:84686576-84686577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs370431887	chr3:84686579-84686580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75060627	chr3:84686588-84686589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs73128878	chr3:84686627-84686628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs190038361	chr3:84686642-84686643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs539671422	chr3:84686650-84686651	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs558604587	chr3:84686663-84686664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs376081886	chr3:84686670-84686671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs572047429	chr3:84686679-84686680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs559753783	chr3:84686720-84686721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs576879816	chr3:84686729-84686730	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs146661457	chr3:84686735-84686736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs140216578	chr3:84686768-84686769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs145270385	chr3:84686769-84686770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs116834218	chr3:84686800-84686801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs368442831	chr3:84687556-84687557	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs115648256	chr3:84687571-84687572	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs533459046	chr3:84687608-84687609	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551910034	chr3:84687625-84687626	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs570141567	chr3:84687660-84687661	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs537698548	chr3:84687682-84687683	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs114110247	chr3:84687684-84687685	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs375612001	chr3:84687685-84687686	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs543207512	chr3:84687742-84687743	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs368361113	chr3:84687779-84687780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs372585093	chr3:84687783-84687784	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs185443606	chr3:84687815-84687816	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs558077816	chr3:84687825-84687826	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs576132417	chr3:84687886-84687887	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs543674187	chr3:84687968-84687969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs368344932	chr3:84687993-84687994	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs141879388	chr3:84688008-84688009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs150649641	chr3:84688032-84688033	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs541389427	chr3:84688038-84688039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs188197422	chr3:84688069-84688070	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs371920419	chr3:84688084-84688085	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs528851596	chr3:84688135-84688136	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs139156093	chr3:84688167-84688168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs901134	chr3:84688173-84688174	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs371226106	chr3:84688187-84688188	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs181347509	chr3:84688200-84688201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs118181065	chr3:84688210-84688211	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs4373074	chr3:84688248-84688249	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs78783360	chr3:84688254-84688255	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs140146894	chr3:84688286-84688287	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs150072095	chr3:84688308-84688309	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs144326671	chr3:84688331-84688332	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
Medulloblastoma	16783165	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Schizophrenia	23813976	CNVD
Lung squamous cell carcinoma	22363434	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84686400-84686800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr3:84703000-84703200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:84703200-84711600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:84707000-84707800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:84709000-84710000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:84709600-84710800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:84710400-84710800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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