Variant report

Variant	nsv1002800
Chromosome Location	chr3:24924723-24942605
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57861594..57864060-chr3:24935061..24936561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267637	chromatin interactions

Extended variants
information (count: 497 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:497 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575348538	chr3:24924753-24924754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs546248491	chr3:24924794-24924795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368557682	chr3:24924848-24924849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs3221508	chr3:24924850-24924851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs529541190	chr3:24924871-24924872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs397837329	chr3:24924880-24924881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs72554268	chr3:24924885-24924886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs3057220	chr3:24924886-24924887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574172251	chr3:24924903-24924904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144798233	chr3:24924916-24924917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs57267142	chr3:24924950-24924951	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs540202866	chr3:24924953-24924954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs11715275	chr3:24924970-24924971	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs529156803	chr3:24924985-24924986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550805362	chr3:24924991-24924992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138847320	chr3:24925017-24925018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182979229	chr3:24925018-24925019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551435742	chr3:24925040-24925041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs115463265	chr3:24925070-24925071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs533779794	chr3:24925119-24925120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs149379184	chr3:24925149-24925150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs568422220	chr3:24925165-24925166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs144651876	chr3:24925183-24925184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557676051	chr3:24925189-24925190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557152555	chr3:24925213-24925214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs533600326	chr3:24925230-24925231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546013093	chr3:24925233-24925234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571233260	chr3:24925256-24925257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188421850	chr3:24925337-24925338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547586095	chr3:24925341-24925342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs148506537	chr3:24925347-24925348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs562025137	chr3:24925397-24925398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs529220518	chr3:24925407-24925408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577718094	chr3:24925418-24925419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544491184	chr3:24925423-24925424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370051321	chr3:24925425-24925426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs116675977	chr3:24925445-24925446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551233101	chr3:24925511-24925512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372592214	chr3:24925517-24925518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141859101	chr3:24925535-24925536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs548583905	chr3:24925548-24925549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566892063	chr3:24925550-24925551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192259768	chr3:24925577-24925578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540048246	chr3:24925590-24925591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs386659424	chr3:24925595-24925596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556991503	chr3:24925617-24925618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs569393889	chr3:24925641-24925642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116448123	chr3:24925785-24925786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147320503	chr3:24925790-24925791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573299470	chr3:24925797-24925798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	17327916	CNVD
Glioblastoma multiforme	21080181	CNVD
Neuroblastoma	18923191	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
lymphocytic leukemia	21291569	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Esophageal cancer	20955586	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	17550852	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24924600-24928000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24927800-24928400	Enhancers	Fetal Kidney	kidney
3	chr3:24928000-24928200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24928000-24928200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:24928200-24929400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:24929400-24929600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24930400-24930600	Enhancers	Fetal Lung	lung
8	chr3:24930600-24931600	Weak transcription	Fetal Lung	lung
9	chr3:24931600-24931800	Enhancers	Fetal Lung	lung
10	chr3:24934000-24934200	Enhancers	Fetal Lung	lung
11	chr3:24940400-24942600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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