Variant report

Variant	nsv1007340
Chromosome Location	chr3:102108954-102725099
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2724)
CpG islands
(count:488)
Chromatin interactive
region (count:66)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:2724 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:102243673-102243803	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:102389996-102390294	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:102392377-102392677	HepG2	liver:	n/a	n/a
4	ATF2	chr3:102433789-102434329	GM12878	blood:	n/a	n/a
5	ATF2	chr3:102407030-102407386	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr3:102406889-102407383	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr3:102207647-102207651	K562	blood:	n/a	n/a
8	BACH1	chr3:102648843-102648847	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr3:102179530-102179782	H1-hESC	embryonic stem cell:	n/a	n/a
10	BATF	chr3:102433856-102434213	GM12878	blood:	n/a	chr3:102434009-102434020
11	BATF	chr3:102652328-102652528	GM12878	blood:	n/a	n/a
12	BATF	chr3:102433864-102434252	GM12878	blood:	n/a	chr3:102434009-102434020
13	BCL11A	chr3:102433900-102434146	GM12878	blood:	n/a	chr3:102434012-102434021
14	BCL11A	chr3:102328491-102328898	GM12878	blood:	n/a	n/a
15	BCL11A	chr3:102407072-102407277	H1-hESC	embryonic stem cell:	n/a	n/a
16	BCL11A	chr3:102407054-102407384	H1-hESC	embryonic stem cell:	n/a	n/a
17	BCL3	chr3:102698808-102699149	A549	lung:	n/a	n/a
18	BCLAF1	chr3:102392360-102392720	GM12878	blood:	n/a	chr3:102392461-102392470
19	BCLAF1	chr3:102392318-102392743	GM12878	blood:	n/a	chr3:102392461-102392470
20	BHLHE40	chr3:102422725-102422866	GM12878	blood:	n/a	n/a
21	BHLHE40	chr3:102392374-102392692	GM12878	blood:	n/a	n/a
22	BRCA1	chr3:102327675-102328111	Hela-S3	cervix:	n/a	n/a
23	BRCA1	chr3:102248321-102248680	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr3:102229367-102229945	Hela-S3	cervix:	n/a	n/a
25	BRCA1	chr3:102392547-102392568	HepG2	liver:	n/a	n/a
26	BRCA1	chr3:102392399-102392703	Hela-S3	cervix:	n/a	n/a
27	BRCA1	chr3:102706022-102706061	Hela-S3	cervix:	n/a	n/a
28	BRCA1	chr3:102698938-102699119	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr3:102249250-102250013	Hela-S3	cervix:	n/a	n/a
30	BRCA1	chr3:102250652-102250815	Hela-S3	cervix:	n/a	n/a
31	CBX3	chr3:102119533-102120062	HCT-116	colon:	n/a	n/a
32	CBX3	chr3:102645276-102645646	HCT-116	colon:	n/a	n/a
33	CBX3	chr3:102433895-102434298	HCT-116	colon:	n/a	n/a
34	CCNT2	chr3:102592280-102592455	K562	blood:	n/a	n/a
35	CEBPB	chr3:102453071-102453323	H1-hESC	embryonic stem cell:	n/a	chr3:102453202-102453213
36	CEBPB	chr3:102615745-102616028	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr3:102614513-102614802	HepG2	liver:	n/a	chr3:102614668-102614681 chr3:102614669-102614680
38	CEBPB	chr3:102580890-102581090	A549	lung:	n/a	n/a
39	CEBPB	chr3:102476691-102477111	A549	lung:	n/a	chr3:102476939-102476950
40	CEBPB	chr3:102255062-102256399	Hela-S3	cervix:	n/a	chr3:102256148-102256159
41	CEBPB	chr3:102570456-102570693	HepG2	liver:	n/a	chr3:102570542-102570553
42	CEBPB	chr3:102428665-102428945	IMR90	lung:	n/a	chr3:102428795-102428808 chr3:102428795-102428806
43	CEBPB	chr3:102179492-102179804	Hela-S3	cervix:	n/a	n/a
44	CEBPB	chr3:102166142-102166464	IMR90	lung:	n/a	n/a
45	CEBPB	chr3:102716592-102716861	HepG2	liver:	n/a	chr3:102716696-102716707
46	CEBPB	chr3:102277553-102277703	H1-hESC	embryonic stem cell:	n/a	chr3:102277568-102277579
47	CEBPB	chr3:102332793-102333702	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr3:102635376-102635708	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr3:102546985-102547314	IMR90	lung:	n/a	chr3:102547136-102547147 chr3:102547150-102547161
50	CEBPB	chr3:102491824-102492038	A549	lung:	n/a	n/a

(count:488 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:102392777-102392827	PrEC	prostate:	n/a
2	chr3:102333494-102333544	NHDF-neo	bronchial:	n/a
3	chr3:102156072-102156122	HRE	kidney:	n/a
4	chr3:102187934-102187984	HCPEpiC	choroid plexus:	n/a
5	chr3:102452667-102452717	MCF-7	breast:	n/a
6	chr3:102154087-102154137	HPAEpiC	pulmonary alveolar:	n/a
7	chr3:102333494-102333544	AG09319	gingival:	n/a
8	chr3:102198240-102198290	SKMC	muscle:	n/a
9	chr3:102198240-102198290	AG04450	lung:	fetal
10	chr3:102392777-102392827	HCM	heart:	n/a
11	chr3:102198240-102198290	GM19239	blood:	n/a
12	chr3:102156072-102156122	SK-N-MC	brain:	n/a
13	chr3:102198240-102198290	HRCEpiC	kidney:	n/a
14	chr3:102187934-102187984	NHDF-neo	bronchial:	n/a
15	chr3:102399370-102399420	U87	brain:	n/a
16	chr3:102399370-102399420	HCPEpiC	choroid plexus:	n/a
17	chr3:102198240-102198290	Caco-2	colon:	n/a
18	chr3:102392777-102392827	PANC-1	pancreas:	n/a
19	chr3:102156072-102156122	NHBE	bronchial:	n/a
20	chr3:102187934-102187984	NB4	blood:	n/a
21	chr3:102399370-102399420	HRCEpiC	kidney:	n/a
22	chr3:102187934-102187984	HUVEC	blood vessel:	n/a
23	chr3:102198240-102198290	Hepatocyte	liver:	n/a
24	chr3:102187934-102187984	HRPEpiC	eye:	n/a
25	chr3:102392777-102392827	HRE	kidney:	n/a
26	chr3:102452667-102452717	ovcar-3	ovarian:	n/a
27	chr3:102452667-102452717	ECC-1	luminal epithelium:	n/a
28	chr3:102154087-102154137	HRE	kidney:	n/a
29	chr3:102452667-102452717	A549	lung:	n/a
30	chr3:102333494-102333544	HEEpiC	esophagus:	n/a
31	chr3:102399370-102399420	HPAEpiC	pulmonary alveolar:	n/a
32	chr3:102187934-102187984	BJ	skin:	n/a
33	chr3:102187934-102187984	PFSK-1	brain:	n/a
34	chr3:102198240-102198290	IMR90	lung:	fetal
35	chr3:102392777-102392827	SK-N-SH_RA	brain:	n/a
36	chr3:102399370-102399420	NHBE	bronchial:	n/a
37	chr3:102154087-102154137	AG09309	skin:	n/a
38	chr3:102156072-102156122	BE2_C	brain:	n/a
39	chr3:102156072-102156122	A549	lung:	n/a
40	chr3:102392777-102392827	AG09309	skin:	n/a
41	chr3:102399370-102399420	IMR90	lung:	fetal
42	chr3:102154087-102154137	HL-60	blood:	n/a
43	chr3:102156072-102156122	LNCaP	prostate:	n/a
44	chr3:102156072-102156122	AG04449	skin:	fetal
45	chr3:102452667-102452717	HRCEpiC	kidney:	n/a
46	chr3:102333494-102333544	HCM	heart:	n/a
47	chr3:102333494-102333544	NB4	blood:	n/a
48	chr3:102399370-102399420	Caco-2	colon:	n/a
49	chr3:102154087-102154137	LNCaP	prostate:	n/a
50	chr3:102156072-102156122	HepG2	liver:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:102178264..102180140-chr3:102180823..102183403,2	MCF-7	breast:
2	chr17:56708753..56709302-chr3:102427713..102428213,2	MCF-7	breast:
3	chr3:102426713..102428233-chr9:94668915..94670633,2	K562	blood:
4	chr3:101947615..101948697-chr3:102248082..102248977,5	MCF-7	breast:
5	chr3:102043009..102043823-chr3:102172889..102173620,2	MCF-7	breast:
6	chr3:102189787..102190495-chr3:102248139..102248658,2	MCF-7	breast:
7	chr3:102189575..102190143-chr3:102459670..102460629,2	MCF-7	breast:
8	chr14:50456042..50458929-chr3:102668264..102669764,2	MCF-7	breast:
9	chr3:102185034..102185962-chr3:102248252..102249000,2	MCF-7	breast:
10	chr3:102170010..102172131-chr3:102173986..102176853,2	K562	blood:
11	chr3:102189787..102190495-chr3:102248139..102248658,2	MCF-7	breast:
12	chr3:102178264..102180140-chr3:102180823..102183403,2	MCF-7	breast:
13	chr11:118778943..118781778-chr3:102426713..102428213,2	MCF-7	breast:
14	chr3:101947690..101948571-chr3:102248035..102249002,3	MCF-7	breast:
15	chr3:101954078..101955171-chr3:102248014..102249330,9	MCF-7	breast:
16	chr3:102614501..102616425-chr3:102617335..102619639,2	K562	blood:
17	chr3:102391655..102393123-chr3:102459418..102460722,10	MCF-7	breast:
18	chr3:102189575..102190143-chr3:102459670..102460629,2	MCF-7	breast:
19	chr3:102185034..102185962-chr3:102248252..102249000,2	MCF-7	breast:
20	chr3:102115274..102117462-chr3:102120586..102123538,2	MCF-7	breast:
21	chr3:102189575..102190499-chr3:102248099..102248934,2	MCF-7	breast:
22	chr3:102436503..102438389-chr3:102438528..102440294,2	MCF-7	breast:
23	chr3:102464455..102465347-chr3:103014445..103015094,2	MCF-7	breast:
24	chr3:101954322..101954985-chr3:102184678..102185179,2	MCF-7	breast:
25	chr20:56269510..56272225-chr3:102426713..102428233,3	MCF-7	breast:
26	chr3:102184197..102185596-chr3:102248087..102248957,3	MCF-7	breast:
27	chr3:102239730..102242491-chr3:102243042..102245931,2	MCF-7	breast:
28	chr3:102390233..102392000-chr3:102397005..102399673,2	K562	blood:
29	chr3:102239730..102242491-chr3:102243042..102245931,2	MCF-7	breast:
30	chr3:102388490..102390464-chr3:102393522..102395423,2	K562	blood:
31	chr3:102170010..102172131-chr3:102173986..102176853,2	K562	blood:
32	chr12:56546032..56548424-chr3:102426713..102428233,2	MCF-7	breast:
33	chr3:102476779..102479193-chr3:102480269..102482631,2	K562	blood:
34	chr3:102043009..102043544-chr3:102172789..102173389,2	MCF-7	breast:
35	chr3:102388490..102390464-chr3:102393522..102395423,2	K562	blood:
36	chr17:57914812..57915374-chr3:102427713..102428233,2	MCF-7	breast:
37	chr3:102388308..102390464-chr3:102393036..102395423,2	K562	blood:
38	chr3:102436503..102438389-chr3:102438528..102440294,2	MCF-7	breast:
39	chr3:101954266..101954823-chr3:102459665..102460276,2	MCF-7	breast:
40	chr3:101947609..101948580-chr3:102255071..102256044,5	MCF-7	breast:
41	chr3:102115274..102117462-chr3:102120586..102123538,2	MCF-7	breast:
42	chr3:102426713..102428233-chr3:161131598..161134258,2	MCF-7	breast:
43	chr17:57917124..57920044-chr3:102426713..102428447,2	MCF-7	breast:
44	chr3:101954224..101955261-chr3:102248060..102248912,4	MCF-7	breast:
45	chr12:122459732..122460381-chr3:102427713..102428233,2	MCF-7	breast:
46	chr3:102113340..102116015-chr3:102116422..102118729,2	MCF-7	breast:
47	chr3:102605564..102608047-chr3:102611373..102613671,2	MCF-7	breast:
48	chr17:58677371..58678089-chr3:102427713..102428213,2	MCF-7	breast:
49	chr3:102390944..102392108-chr3:102459462..102460176,3	MCF-7	breast:
50	chr3:102476779..102479193-chr3:102480269..102482631,2	K562	blood:

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL24-2	chr3:102386026-102386119	XLOC_003194
2	lnc-RPL24-2	chr3:102392598-102392757	XLOC_003194
3	lnc-ZPLD1-4	chr3:102651432-102651851	NONHSAT090938
4	lnc-RPL24-5	chr3:102298795-102299045	expReg_chr3_7266_-
5	lnc-ZPLD1-4	chr3:102651432-102651473	FPKM1_group_21624_transcript_1
6	lnc-ZPLD1-1	chr3:102446237-102446410	NONHSAT090933
7	lnc-ZPLD1-1	chr3:102444626-102444901	NONHSAT090932
8	lnc-ZPLD1-1	chr3:102446238-102446423	NONHSAT090932
9	lnc-ZPLD1-1	chr3:102429679-102429722	NONHSAT090932
10	lnc-ZPLD1-1	chr3:102444625-102444901	XLOC_002742
11	lnc-ZPLD1-1	chr3:102444624-102444901	NONHSAT090933
12	lnc-RPL24-2	chr3:102392598-102392850	XLOC_003194
13	lnc-ZPLD1-2	chr3:102636251-102636282	XLOC_002743
14	lnc-ZPLD1-1	chr3:102446238-102446410	XLOC_002742
15	lnc-ZPLD1-4	chr3:102644557-102644725	NONHSAT090938
16	lnc-RPL24-2	chr3:102386026-102386119	XLOC_003194
17	lnc-RPL24-2	chr3:102392598-102392802	XLOC_003194
18	lnc-RPL24-2	chr3:102382007-102382267	XLOC_003194
19	lnc-RPL24-2	chr3:102387891-102388106	XLOC_003194
20	lnc-ZPLD1-4	chr3:102644557-102644725	FPKM1_group_21624_transcript_1
21	lnc-RPL24-2	chr3:102379501-102379812	XLOC_003194
22	lnc-RPL24-2	chr3:102383382-102384456	XLOC_003194
23	lnc-RPL24-2	chr3:102382143-102382168	XLOC_003194

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZPLD1	hsa-miR-148b-3p	chr3:102197644-102197664

Variant related genes	Relation type
RNU6-461P	TF binding region
ENSG00000241754	TF binding region
ZPLD1	TF binding region
RNU6-461P	CpG island
ENSG00000241754	CpG island
ZPLD1	CpG island
ENSG00000241754	chromatin interactions
ENSG00000170836	chromatin interactions
ENSG00000196465	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000110987	chromatin interactions
ENSG00000264211	chromatin interactions
ENSG00000199004	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000213994	chromatin interactions
ENSG00000170525	chromatin interactions
ENSG00000186174	chromatin interactions
FAM122B	miRNA target sites
ARHGAP12	miRNA target sites
FAM122A	miRNA target sites

Extended variants
information (count: 11371 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:11371 , 50 per page) page: 1 2 3 4 5 6 7 ... 228

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538002865	chr3:102109605-102109606	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs556348686	chr3:102109611-102109612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs571404107	chr3:102109676-102109677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs184508119	chr3:102109679-102109680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs553863321	chr3:102109700-102109701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs376422041	chr3:102109746-102109747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs572369855	chr3:102109747-102109748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs536712513	chr3:102109753-102109754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs527271797	chr3:102109772-102109773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs188801801	chr3:102109776-102109777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs573990143	chr3:102109786-102109787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs34706457	chr3:102109790-102109791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs535390192	chr3:102109830-102109831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs544412899	chr3:102109845-102109846	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562722291	chr3:102109876-102109877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs547125353	chr3:102109893-102109894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs74470186	chr3:102109923-102109924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs545161164	chr3:102109956-102109957	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs560007026	chr3:102110004-102110005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs557706040	chr3:102110021-102110022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs150786587	chr3:102110061-102110062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs567914597	chr3:102110087-102110088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs111586930	chr3:102110124-102110125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs181191955	chr3:102110186-102110187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs113673365	chr3:102110191-102110192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs576044022	chr3:102110217-102110218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs531928341	chr3:102110249-102110250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs186166135	chr3:102110252-102110253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs114402087	chr3:102110256-102110257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs538862636	chr3:102110260-102110261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547839407	chr3:102110266-102110267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566042686	chr3:102110279-102110280	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189030477	chr3:102110290-102110291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs554704230	chr3:102110330-102110331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs556706037	chr3:102110332-102110333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs62274719	chr3:102110333-102110334	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs77029966	chr3:102110350-102110351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556379450	chr3:102110387-102110388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs78737214	chr3:102110405-102110406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs74958445	chr3:102110421-102110422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560147927	chr3:102110425-102110426	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs572056611	chr3:102110431-102110432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs540380878	chr3:102110469-102110470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs562165951	chr3:102110496-102110497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs542599239	chr3:102110524-102110525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs560576836	chr3:102110542-102110543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs35864882	chr3:102110546-102110547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs34910740	chr3:102110547-102110548	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs531868601	chr3:102110556-102110557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs370511868	chr3:102110591-102110592	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:913 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102109600-102111400	Enhancers	Fetal Brain Male	brain
2	chr3:102110600-102111200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:102111400-102117200	Weak transcription	Fetal Brain Male	brain
4	chr3:102112800-102114000	Enhancers	HMEC	breast
5	chr3:102113000-102113800	Enhancers	NHEK	skin
6	chr3:102113200-102114000	Enhancers	HSMM	muscle
7	chr3:102113400-102113800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:102113800-102117200	Weak transcription	NHEK	skin
9	chr3:102113800-102118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:102114000-102118000	Weak transcription	HMEC	breast
11	chr3:102114000-102119000	Weak transcription	HSMM	muscle
12	chr3:102114200-102117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:102117200-102117400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:102117200-102117600	Enhancers	NHEK	skin
15	chr3:102117200-102117800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:102117200-102118200	Enhancers	Fetal Brain Male	brain
17	chr3:102117400-102117600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:102117400-102119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:102117600-102118000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:102117600-102118800	Weak transcription	NHEK	skin
21	chr3:102117800-102118000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:102118000-102118400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:102118000-102118400	Enhancers	HMEC	breast
24	chr3:102118000-102119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:102118000-102119200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:102118400-102118600	Weak transcription	HMEC	breast
27	chr3:102118400-102119200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:102118400-102120800	Enhancers	Hela-S3	cervix
29	chr3:102118600-102120400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr3:102118600-102120600	Enhancers	HMEC	breast
31	chr3:102118600-102121000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:102118800-102119000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:102118800-102119600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:102118800-102121400	Enhancers	NHEK	skin
35	chr3:102119000-102120600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:102119000-102120600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:102119000-102120800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr3:102119000-102120800	Enhancers	HSMM	muscle
39	chr3:102119200-102119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:102119200-102120000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:102119200-102120600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr3:102119200-102120800	Enhancers	NH-A	brain
43	chr3:102119600-102120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:102120000-102120200	Enhancers	Fetal Brain Male	brain
45	chr3:102120000-102120400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:102120000-102120400	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr3:102120200-102120400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:102120200-102120800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:102120400-102121000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:102120400-102121600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links